Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004525A_C01 KMC004525A_c01
(357 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176045.1| hypothetical protein; protein id: At1g56530.1 [... 37 0.002
emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis] 37 0.003
pir||G86292 hypothetical protein F7H2.17 [imported] - Arabidopsi... 36 0.004
gb|AAL87169.1|AF480496_23 hypothetical protein [Oryza sativa (ja... 41 0.004
ref|XP_208683.1| similar to protein kinase related to Raf protei... 41 0.004
>ref|NP_176045.1| hypothetical protein; protein id: At1g56530.1 [Arabidopsis
thaliana]
Length = 185
Score = 36.6 bits (83), Expect(2) = 0.002
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 7/65 (10%)
Frame = +1
Query: 127 PTENPNNR--YRNTQLSLSPSSP----KTLSRAATTSFSLIAPPPP-PLFHSAPPPLPLF 285
P+ +P+N +R T + P +T + A TT+ + PPP P S PPP P
Sbjct: 105 PSPSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAGQPPPPESPPPESLPPPSPES 164
Query: 286 PSPPS 300
PSPPS
Sbjct: 165 PSPPS 169
Score = 24.6 bits (52), Expect(2) = 0.002
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 276 SSLPITTEPQPPNQLSPHQPTP 341
S P + EP PP+ L P P P
Sbjct: 164 SPSPPSPEPPPPSSLEPPPPPP 185
>emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis]
Length = 687
Score = 37.0 bits (84), Expect(2) = 0.003
Identities = 23/61 (37%), Positives = 26/61 (41%)
Frame = +1
Query: 124 TPTENPNNRYRNTQLSLSPSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLPLFPSPPSH 303
T P+ + N S P SP S + APPP P S PPP P PSPP
Sbjct: 556 TSPSPPDPAWANLPTSPDPPSPNPPSPDPPSPDPPSAPPPSPPPPSPPPPNPPPPSPPPP 615
Query: 304 N 306
N
Sbjct: 616 N 616
Score = 30.8 bits (68), Expect(2) = 0.67
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = +1
Query: 169 SLSPSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLPLFPSPPSHN 306
S P SP S PPP P S PPP P PSPP N
Sbjct: 591 SAPPPSPPPPSPPPPNPPPPSPPPPNPPPPSPPPPSPPPPSPPPPN 636
Score = 29.3 bits (64), Expect(2) = 0.24
Identities = 18/41 (43%), Positives = 20/41 (47%)
Frame = +1
Query: 178 PSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLPLFPSPPS 300
P SP+ R S PPP P S PPP P PSPP+
Sbjct: 521 PPSPRPPPRPPPRPSSPRPPPPDP---SPPPPSP--PSPPT 556
Score = 29.3 bits (64), Expect(2) = 1.8
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +1
Query: 172 LSPSSPKTLSRAATTSFSLIAPPPP-PLFHSAPPPLPLFPSPP 297
+SP LS T + +PPPP P PPP P+ P+PP
Sbjct: 461 VSPDECPPLSVLETLPSAPPSPPPPSPPPPRPPPPSPVPPTPP 503
Score = 26.9 bits (58), Expect(2) = 2.4
Identities = 14/42 (33%), Positives = 19/42 (44%)
Frame = +1
Query: 175 SPSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLPLFPSPPS 300
SP SP T +++ + P P + P P P P PPS
Sbjct: 550 SPPSPPTSPSPPDPAWANLPTSPDPPSPNPPSPDPPSPDPPS 591
Score = 24.6 bits (52), Expect(2) = 0.24
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +3
Query: 276 SSLPITTEPQPPNQLSPHQPTP 341
++LP + +P PN SP P+P
Sbjct: 566 ANLPTSPDPPSPNPPSPDPPSP 587
Score = 23.5 bits (49), Expect(2) = 2.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 285 PITTEPQPPNQLSPHQPTPSKGP 353
P P PPN P P PS P
Sbjct: 607 PPPPSPPPPNPPPPSPPPPSPPP 629
Score = 23.5 bits (49), Expect(2) = 0.003
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 285 PITTEPQPPNQLSPHQPTPSKGP 353
P P PPN P P PS P
Sbjct: 627 PPPPSPPPPNPPPPSPPPPSPRP 649
Score = 21.6 bits (44), Expect(2) = 1.8
Identities = 10/26 (38%), Positives = 11/26 (41%)
Frame = +3
Query: 276 SSLPITTEPQPPNQLSPHQPTPSKGP 353
S +P T P P SP P P P
Sbjct: 496 SPVPPTPPPSPRPPPSPRPPNPPPRP 521
Score = 21.6 bits (44), Expect(2) = 0.67
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3
Query: 285 PITTEPQPPNQLSPHQPTPSKGP 353
P P PP+ P P PS P
Sbjct: 637 PPPPSPPPPSPRPPTPPPPSPPP 659
>pir||G86292 hypothetical protein F7H2.17 [imported] - Arabidopsis thaliana
gi|8927662|gb|AAF82153.1|AC034256_17 Contains similarity
to extensin (atExt1) from Arabidopsis thaliana gb|U43627
and is rich in proline and glycine. EST gb|Z37262 comes
from this gene
Length = 1006
Score = 35.8 bits (81), Expect(2) = 0.004
Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
Frame = +1
Query: 130 TENPNNRYRNTQLSLSPSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPL--PLFPSPP 297
T +P N + Q P P+ R + + P PPP H P P PL PSPP
Sbjct: 86 TPSPENPFLPFQPPRPPPRPRPRPRPSPRLPPPLVPSPPPPLHPRPSPCPPPLMPSPP 143
Score = 35.4 bits (80), Expect = 0.18
Identities = 20/44 (45%), Positives = 22/44 (49%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 LSPSSPKTLSRAATTSFSLIAPPPPPLFHS--APPPLPLFPSPP 297
L PS P L + + P PPPL S PPP PL PSPP
Sbjct: 119 LVPSPPPPLHPRPSPCPPPLMPSPPPLVPSPPPPPPSPLVPSPP 162
Score = 33.1 bits (74), Expect = 0.91
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +1
Query: 175 SPSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLP----LFPSPP 297
SP P + S PPP PL S PPP P FPSPP
Sbjct: 132 SPCPPPLMPSPPPLVPSPPPPPPSPLVPSPPPPSPPPFFFFPSPP 176
Score = 32.0 bits (71), Expect = 2.0
Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 232 APPPPPLFHSAP-PPLPLFPSPP 297
AP PPPL S P PPLPL SPP
Sbjct: 519 APLPPPLSSSLPSPPLPLVLSPP 541
Score = 30.0 bits (66), Expect = 7.7
Identities = 18/44 (40%), Positives = 20/44 (44%), Gaps = 4/44 (9%)
Frame = +1
Query: 178 PSSPKTLSRAATTSFSLIAPPPPPLFHSAPP----PLPLFPSPP 297
P P + T F I PP PPLF PP P P+ P PP
Sbjct: 475 PPVPPVIPFVPTPIF--ILPPLPPLFPVLPPPSVTPSPVLPLPP 516
Score = 30.0 bits (66), Expect = 7.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = +1
Query: 172 LSPSSPKTLSRAATTSFSLIAPPPPP-------LFHSAPPPLPLFPSP 294
L PS P + S + P PPP F S PPP+ +FP P
Sbjct: 138 LMPSPPPLVPSPPPPPPSPLVPSPPPPSPPPFFFFPSPPPPVIVFPPP 185
Score = 24.3 bits (51), Expect(2) = 0.004
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 300 PQPPNQLSPHQPTPSKGPY 356
P PP+ L P P PS P+
Sbjct: 151 PPPPSPLVPSPPPPSPPPF 169
>gb|AAL87169.1|AF480496_23 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 427
Score = 40.8 bits (94), Expect = 0.004
Identities = 21/66 (31%), Positives = 30/66 (44%)
Frame = +1
Query: 151 YRNTQLSLSPSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLPLFPSPPSHNHQINYHRI 330
+ N L+ +P SP + PPPPPL H PP P P H+H ++H
Sbjct: 371 HNNKHLAKTPPSPTS------------QPPPPPLHHDPSPP----PPPHHHHHHHHHHHP 414
Query: 331 NPHHRR 348
HH++
Sbjct: 415 PQHHQQ 420
>ref|XP_208683.1| similar to protein kinase related to Raf protein kinases; Method:
conceptual translation supplied by author [Homo sapiens]
gi|27734771|ref|NP_775869.1| hypothetical protein
FLJ25965 [Homo sapiens] gi|21758964|dbj|BAC05426.1|
unnamed protein product [Homo sapiens]
Length = 439
Score = 40.8 bits (94), Expect = 0.004
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 178 PSSPKTLSRAATTSFSLIAPPPPPLFHSAPPPLPLFPSPPSHNHQINYHRINPHH 342
P P + S ++T+ S + P PPL SA PP PL PSP Q N++ H+
Sbjct: 209 PYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSPQCTRQQKNFNLPASHY 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,454,317
Number of Sequences: 1393205
Number of extensions: 9196840
Number of successful extensions: 135088
Number of sequences better than 10.0: 1634
Number of HSP's better than 10.0 without gapping: 57351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113835
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
