Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004524A_C01 KMC004524A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC07504.2| receptor-like protein kinase [Nicotiana tabacum] 140 6e-33
gb|AAL25569.1| At2g31880/F20M17.8 [Arabidopsis thaliana] 139 1e-32
ref|NP_180747.1| leucine-rich repeat transmembrane protein kinas... 139 1e-32
ref|NP_172335.1| CLAVATA1 receptor kinase( CLV1); protein id: At... 57 1e-07
ref|NP_177157.1| leucine-rich repeat transmembrane protein kinas... 57 2e-07
>dbj|BAC07504.2| receptor-like protein kinase [Nicotiana tabacum]
Length = 633
Score = 140 bits (354), Expect = 6e-33
Identities = 64/80 (80%), Positives = 75/80 (93%)
Frame = -3
Query: 501 GKLPSDDFFQHTDEMSLVKWMRKMMTTENPKEAIDTKLLGNGFEEQMLLVLKIACFCTMD 322
GKLPSD+FFQHT EMSLVKW+R +MT+E+PK AID KL+G+GFEEQMLLVLKIACFCT++
Sbjct: 554 GKLPSDEFFQHTPEMSLVKWLRNVMTSEDPKRAIDPKLIGSGFEEQMLLVLKIACFCTLE 613
Query: 321 DPKERPNSKDVRLMLSQIKH 262
+PKERPNSKDVR ML+QIKH
Sbjct: 614 NPKERPNSKDVRCMLTQIKH 633
>gb|AAL25569.1| At2g31880/F20M17.8 [Arabidopsis thaliana]
Length = 641
Score = 139 bits (351), Expect = 1e-32
Identities = 63/80 (78%), Positives = 73/80 (90%)
Frame = -3
Query: 501 GKLPSDDFFQHTDEMSLVKWMRKMMTTENPKEAIDTKLLGNGFEEQMLLVLKIACFCTMD 322
GKLPSD+FFQHTDEMSL+KWMR ++T+ENP AID KL+ GF+EQMLLVLKIAC+CT+D
Sbjct: 562 GKLPSDEFFQHTDEMSLIKWMRNIITSENPSLAIDPKLMDQGFDEQMLLVLKIACYCTLD 621
Query: 321 DPKERPNSKDVRLMLSQIKH 262
DPK+RPNSKDVR MLSQIKH
Sbjct: 622 DPKQRPNSKDVRTMLSQIKH 641
>ref|NP_180747.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g31880.1, supported by cDNA: gi_13877674,
supported by cDNA: gi_16648754 [Arabidopsis thaliana]
gi|25408193|pir||C84726 probable receptor-like protein
kinase [imported] - Arabidopsis thaliana
gi|4887748|gb|AAD32284.1| putative receptor-like protein
kinase [Arabidopsis thaliana]
gi|13877675|gb|AAK43915.1|AF370596_1 putative
receptor-like protein kinase [Arabidopsis thaliana]
Length = 641
Score = 139 bits (351), Expect = 1e-32
Identities = 63/80 (78%), Positives = 73/80 (90%)
Frame = -3
Query: 501 GKLPSDDFFQHTDEMSLVKWMRKMMTTENPKEAIDTKLLGNGFEEQMLLVLKIACFCTMD 322
GKLPSD+FFQHTDEMSL+KWMR ++T+ENP AID KL+ GF+EQMLLVLKIAC+CT+D
Sbjct: 562 GKLPSDEFFQHTDEMSLIKWMRNIITSENPSLAIDPKLMDQGFDEQMLLVLKIACYCTLD 621
Query: 321 DPKERPNSKDVRLMLSQIKH 262
DPK+RPNSKDVR MLSQIKH
Sbjct: 622 DPKQRPNSKDVRTMLSQIKH 641
>ref|NP_172335.1| CLAVATA1 receptor kinase( CLV1); protein id: At1g08590.1 [Arabidopsis
thaliana] gi|7434430|pir||T00712 protein kinase homolog
F22O13.7 - Arabidopsis thaliana
gi|9802553|gb|AAF99755.1|AC003981_5 F22O13.7 [Arabidopsis
thaliana]
Length = 1029
Score = 57.0 bits (136), Expect = 1e-07
Identities = 33/82 (40%), Positives = 51/82 (61%), Gaps = 3/82 (3%)
Frame = -3
Query: 501 GKLPSDDFFQHTDEMSLVKWMR-KMMTTENPKEAIDTKLLGNGFE--EQMLLVLKIACFC 331
GK+P D F+ D + +V+W+R K+ E+ +E ID + G+ E+MLL L+IA C
Sbjct: 925 GKMPIDPSFE--DSIDVVEWIRRKVKKNESLEEVIDASIAGDCKHVIEEMLLALRIALLC 982
Query: 330 TMDDPKERPNSKDVRLMLSQIK 265
T PK+RP+ +DV ML++ K
Sbjct: 983 TAKLPKDRPSIRDVITMLAEAK 1004
>ref|NP_177157.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g69990.1 [Arabidopsis thaliana]
Length = 591
Score = 56.6 bits (135), Expect = 2e-07
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = -3
Query: 456 SLVKWMRKMMTTENPKEAIDTKLLGNGFEEQMLLVLKIACFCTMDDPKERP 304
SLV+W+ K ++ K+AID ++ G G++++++ VL+IAC C + PKERP
Sbjct: 504 SLVEWVSKHLSNGRSKDAIDRRIFGKGYDDEIMQVLRIACSCVVSRPKERP 554
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,922,259
Number of Sequences: 1393205
Number of extensions: 7853852
Number of successful extensions: 18706
Number of sequences better than 10.0: 342
Number of HSP's better than 10.0 without gapping: 18295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18699
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
