Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004520A_C01 KMC004520A_c01
(803 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S55884 CCHH finger protein 4 - Arabidopsis thaliana gi|7906... 60 5e-08
ref|NP_176788.1| C2H2-type zinc finger protein, putative; protei... 60 5e-08
ref|NP_564223.1| zinc finger protein 7, ZFP7; protein id: At1g24... 41 0.023
ref|NP_240195.1| translation initiation factor IF-2 [Buchnera sp... 32 8.3
>pir||S55884 CCHH finger protein 4 - Arabidopsis thaliana
gi|790679|gb|AAA87300.1| zinc finger protein
Length = 259
Score = 59.7 bits (143), Expect = 5e-08
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Frame = -2
Query: 802 PLHGS------NFRSLGIEAHSAMHQRHMASSSLRVPD--MRGAARFEKDYCFGT--PMF 653
PLHGS +FR+LGI AHS+ H S + + P+ +R ARF + Y FG P +
Sbjct: 147 PLHGSGNGNMTSFRTLGIRAHSSAHD---VSMTRQTPETLIRNIARFNQGY-FGNCIPFY 202
Query: 652 MQDGDVGLFWPGSFRQIDARAGVNLGHEHEQHAHNSSPSFVETTPPAQTSTS-PDLTLRL 476
++D + + WPGSFRQ V G++ + F++ +S PDLTL+L
Sbjct: 203 VEDDEAEMLWPGSFRQATNAVAVEAGND---NLGERKMDFLDVKQAMDMESSLPDLTLKL 259
>ref|NP_176788.1| C2H2-type zinc finger protein, putative; protein id: At1g66140.1,
supported by cDNA: gi_13605608, supported by cDNA:
gi_16604377, supported by cDNA: gi_790678 [Arabidopsis
thaliana] gi|27923890|sp|Q39263|ZFP4_ARATH Zinc finger
protein 4 gi|25404589|pir||B96686 probable C2H2-type
zinc finger protein F15E12.19 [imported] - Arabidopsis
thaliana gi|12322602|gb|AAG51296.1|AC026480_3 C2H2-type
zinc finger protein, putative [Arabidopsis thaliana]
gi|13605609|gb|AAK32798.1|AF361630_1 At1g66140/F15E12_19
[Arabidopsis thaliana] gi|15810083|gb|AAL06967.1|
At1g66140/F15E12_19 [Arabidopsis thaliana]
gi|16604378|gb|AAL24195.1| At1g66140/F15E12_19
[Arabidopsis thaliana]
Length = 260
Score = 59.7 bits (143), Expect = 5e-08
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Frame = -2
Query: 802 PLHGS------NFRSLGIEAHSAMHQRHMASSSLRVPD--MRGAARFEKDYCFGT--PMF 653
PLHGS +FR+LGI AHS+ H S + + P+ +R ARF + Y FG P +
Sbjct: 148 PLHGSGNGNMTSFRTLGIRAHSSAHD---VSMTRQTPETLIRNIARFNQGY-FGNCIPFY 203
Query: 652 MQDGDVGLFWPGSFRQIDARAGVNLGHEHEQHAHNSSPSFVETTPPAQTSTS-PDLTLRL 476
++D + + WPGSFRQ V G++ + F++ +S PDLTL+L
Sbjct: 204 VEDDEAEMLWPGSFRQATNAVAVEAGND---NLGERKMDFLDVKQAMDMESSLPDLTLKL 260
>ref|NP_564223.1| zinc finger protein 7, ZFP7; protein id: At1g24625.1, supported by
cDNA: gi_790684 [Arabidopsis thaliana]
gi|27923893|sp|Q39266|ZFP7_ARATH Zinc finger protein 7
gi|1362021|pir||S55887 CCHH finger protein 7 -
Arabidopsis thaliana gi|790685|gb|AAA87303.1| zinc
finger protein gi|9743348|gb|AAF97972.1|AC000103_22
F21J9.29 [Arabidopsis thaliana]
gi|9945081|gb|AAG03118.1|AC004133_12 F5A9.25
[Arabidopsis thaliana] gi|26453036|dbj|BAC43594.1|
putative zinc finger protein ZFP7 [Arabidopsis thaliana]
gi|28973449|gb|AAO64049.1| putative zinc finger protein
7, ZFP7 [Arabidopsis thaliana]
Length = 209
Score = 40.8 bits (94), Expect = 0.023
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Frame = -2
Query: 778 SLGIEAHSAMHQRHMASSSLRVPDMRGAARFEKDYCFGT--PMFMQ--DGDVGLFWPGSF 611
SLG++AHS + ++ V +RF FG P+F DG FWPGSF
Sbjct: 111 SLGMQAHSGLLHHTLSQPQPLV------SRFHHQGYFGNTVPLFFDYDDGGSDFFWPGSF 164
Query: 610 RQIDARAGVNLGHEHEQHAHNSSPSFVETTPPAQTSTSPDLTLRL 476
RQ+ A + + S S+ PDLTLRL
Sbjct: 165 RQVVEEAEAPVVVVASTESGLDLNSVAANGGVDNNSSKPDLTLRL 209
>ref|NP_240195.1| translation initiation factor IF-2 [Buchnera sp. APS]
gi|11132706|sp|P57458|IF2_BUCAI Translation initiation
factor IF-2 gi|25299459|pir||A84974 translation
initiation factor IF-2 [imported] - Buchnera sp. (strain
APS) gi|10039047|dbj|BAB13081.1| translation initiation
factor IF-2 [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 864
Score = 32.3 bits (72), Expect = 8.3
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +2
Query: 8 DSHIN-KKMVQH*LSLAS--KSSKAPYLATTLKM------MRHTNDKKQVMMKTSNKPLI 160
+S +N KK+++H + S K+ + Y+ K+ R N KK+ +K SNK
Sbjct: 101 ESFLNEKKVIKHSMQKTSSLKNKEKKYIKNIEKIELNKSDSRSLNTKKENKLKISNKDEQ 160
Query: 161 NYKYTPHCTMQALPINHFMSEENENSKMKDANDFRV 268
N K+ H + +NH ++K+ D R+
Sbjct: 161 NKKFNQHRESNSFDLNH-------KKRIKENKDIRI 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,754,097
Number of Sequences: 1393205
Number of extensions: 14004040
Number of successful extensions: 31992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31953
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
