Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004519A_C01 KMC004519A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197269.2| putative protein; protein id: At5g17670.1, supp... 134 1e-30
ref|NP_682772.1| ORF_ID:tlr1982~probable lipase [Thermosynechoco... 70 3e-11
gb|AAN46158.1| unknown protein [Synechococcus sp. PCC 7942] 69 4e-11
gb|ZP_00110990.1| hypothetical protein [Nostoc punctiforme] 64 1e-09
ref|NP_484298.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 59 4e-08
>ref|NP_197269.2| putative protein; protein id: At5g17670.1, supported by cDNA:
gi_17065369 [Arabidopsis thaliana]
gi|9759044|dbj|BAB09566.1| gene_id:MVA3.2~unknown
protein [Arabidopsis thaliana]
gi|17065370|gb|AAL32839.1| Unknown protein [Arabidopsis
thaliana] gi|22136268|gb|AAM91212.1| unknown protein
[Arabidopsis thaliana]
Length = 309
Score = 134 bits (337), Expect = 1e-30
Identities = 63/90 (70%), Positives = 73/90 (81%)
Frame = -1
Query: 544 SEAAIMSTETTPPPDTTLRARFVGQGYKQVCGQADVWGDGVVPEVSAYLDGALNICLDGV 365
SE AI S + + T RARFVGQGYKQVCG+ADVWGDGVVPEVSA+L+GALN+ DGV
Sbjct: 224 SELAIASNKKSG----TFRARFVGQGYKQVCGRADVWGDGVVPEVSAHLEGALNVSFDGV 279
Query: 364 YHSPVGSDDAMRPWYGSPDVLEHWIEHLLK 275
YHSPVGSDD RPWYGSP +++ WI HLL+
Sbjct: 280 YHSPVGSDDETRPWYGSPVIVKDWIHHLLE 309
>ref|NP_682772.1| ORF_ID:tlr1982~probable lipase [Thermosynechococcus elongatus BP-1]
gi|22295708|dbj|BAC09534.1| ORF_ID:tlr1982~probable
lipase [Thermosynechococcus elongatus BP-1]
Length = 234
Score = 69.7 bits (169), Expect = 3e-11
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = -1
Query: 481 FVGQGYKQVCGQADVWGDGVVPEVSAYLDGALNICLDGVYHSPVG--SDDAMRPWYGSPD 308
F Q YK CG+ WGDGV P +A+L+GA N+ + V H+P D PWYGSP+
Sbjct: 163 FTYQSYKLTCGEGACWGDGVTPVAAAHLEGAENLVYEDVLHAPRSRLRDRPDAPWYGSPE 222
Query: 307 VLEHWIEHL 281
++ HW ++L
Sbjct: 223 IVAHWQQYL 231
>gb|AAN46158.1| unknown protein [Synechococcus sp. PCC 7942]
Length = 244
Score = 69.3 bits (168), Expect = 4e-11
Identities = 30/63 (47%), Positives = 40/63 (62%)
Frame = -1
Query: 466 YKQVCGQADVWGDGVVPEVSAYLDGALNICLDGVYHSPVGSDDAMRPWYGSPDVLEHWIE 287
Y GQ D WGDG+ P +A+L+GALN+ + VYHSP + R WYGSP++ E W
Sbjct: 182 YSLTIGQGDSWGDGITPIAAAHLEGALNLTYEAVYHSPRPN----RLWYGSPEIAEQWRS 237
Query: 286 HLL 278
HL+
Sbjct: 238 HLV 240
>gb|ZP_00110990.1| hypothetical protein [Nostoc punctiforme]
Length = 231
Score = 64.3 bits (155), Expect = 1e-09
Identities = 26/63 (41%), Positives = 43/63 (67%)
Frame = -1
Query: 466 YKQVCGQADVWGDGVVPEVSAYLDGALNICLDGVYHSPVGSDDAMRPWYGSPDVLEHWIE 287
Y+ CG+ + WGDG+ P +A+L+GA N+ ++GV HSP + WYGSP+ L+ W++
Sbjct: 173 YQLTCGKGNTWGDGITPIEAAHLEGAENLVIEGVRHSP----RSPGMWYGSPEPLKAWVQ 228
Query: 286 HLL 278
+L+
Sbjct: 229 YLI 231
>ref|NP_484298.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25382416|pir||AF1838
hypothetical protein all0254 [imported] - Nostoc sp.
(strain PCC 7120) gi|17135232|dbj|BAB77778.1|
ORF_ID:all0254~hypothetical protein [Nostoc sp. PCC
7120]
Length = 231
Score = 59.3 bits (142), Expect = 4e-08
Identities = 26/62 (41%), Positives = 38/62 (60%)
Frame = -1
Query: 466 YKQVCGQADVWGDGVVPEVSAYLDGALNICLDGVYHSPVGSDDAMRPWYGSPDVLEHWIE 287
Y+ CG + WGDG+ P +A+L GA N+ ++GV HSP WYGSP+ L+ W +
Sbjct: 173 YQLTCGTGNTWGDGITPIAAAHLIGAENLIIEGVRHSPRNPG----IWYGSPEPLKAWTK 228
Query: 286 HL 281
+L
Sbjct: 229 YL 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,128,557
Number of Sequences: 1393205
Number of extensions: 13295817
Number of successful extensions: 40390
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 37862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40306
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
