Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004518A_C01 KMC004518A_c01
(709 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB64569.1| multidrug resistance protein, copy 2 [Leishmania... 35 1.3
gb|AAF73798.1|AF154029_1 surface protein PspC [Streptococcus pne... 35 1.3
ref|NP_126403.1| CO-induced hydrogenase related, subunit K [Pyro... 33 3.9
sp|P37935|MAY4_SCHCO Mating-type protein A-alpha Y4 gi|101948|pi... 32 6.6
ref|NP_505077.1| Seven TM Receptor STR-139 (str-139) [Caenorhabd... 32 6.6
>emb|CAB64569.1| multidrug resistance protein, copy 2 [Leishmania major]
Length = 1824
Score = 34.7 bits (78), Expect = 1.3
Identities = 22/86 (25%), Positives = 37/86 (42%)
Frame = -1
Query: 637 AHLFEAFFWLYSVFLSPEEFAVLMGSELCAVKLPFLFGAFVQHFRWEVSILCHVCGVPLP 458
A L E F+W +F +G ++C + +PFL FV H G+ L
Sbjct: 503 ASLPEYFWW---------QFPFKLGGDVCTITIPFLLKVFVHFISERNQSWAH--GLAL- 550
Query: 457 PCCGSFILSMIQAILFHEYEFCNISC 380
F+ +IQ++ H + + +I C
Sbjct: 551 -AVTFFLTQLIQSVCLHRFYYVSIKC 575
>gb|AAF73798.1|AF154029_1 surface protein PspC [Streptococcus pneumoniae]
Length = 752
Score = 34.7 bits (78), Expect = 1.3
Identities = 21/85 (24%), Positives = 42/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 457 GGGAHRKHGKEWTLPT-----ESVAQKHQIETATSLHKVLSPSKLQTLQGSKRLSRAKKM 621
GG H + + W P +++++KH E + L K+LS +L + ++ L+ KK+
Sbjct: 32 GGVVHAEGVRSWDTPKVTPSGQNISKKHPDEVKSHLEKILSEIQLDKRKHTQNLAFNKKL 91
Query: 622 PQINGQPFDSPKELIRAENLRNKQQ 696
+I + F K+L + K++
Sbjct: 92 SRIQTEYFYLKKKLKAELTSKTKEE 116
>ref|NP_126403.1| CO-induced hydrogenase related, subunit K [Pyrococcus abyssi]
gi|7431908|pir||A75115 probable NADH2 dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 1 PAB1893 [similarity] -
Pyrococcus abyssi (strain Orsay)
gi|5458145|emb|CAB49634.1| NADH dehydrogenase subunit
[Pyrococcus abyssi]
Length = 321
Score = 33.1 bits (74), Expect = 3.9
Identities = 19/58 (32%), Positives = 29/58 (49%)
Frame = -1
Query: 580 FAVLMGSELCAVKLPFLFGAFVQHFRWEVSILCHVCGVPLPPCCGSFILSMIQAILFH 407
FAV+ G V+ PF G+ +H WE+ + V GV L S++ S I+ F+
Sbjct: 149 FAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFN 206
>sp|P37935|MAY4_SCHCO Mating-type protein A-alpha Y4 gi|101948|pir||C37271 A-alpha Y 4
protein - bracket fungus (Schizophyllum commune)
gi|169861|gb|AAB01373.1| A-alpha-Y4 protein
[Schizophyllum commune]
Length = 928
Score = 32.3 bits (72), Expect = 6.6
Identities = 17/63 (26%), Positives = 30/63 (46%)
Frame = +1
Query: 514 AQKHQIETATSLHKVLSPSKLQTLQGSKRLSRAKKMPQINGQPFDSPKELIRAENLRNKQ 693
++K + E A+ + V ++ + KK+P+ GQPFD P ++ RA+ K
Sbjct: 317 SKKAKKEKASQQNVVCDVEMRDATATKEKRRKMKKLPRAAGQPFDVPMDVERADKASRKA 376
Query: 694 QDK 702
K
Sbjct: 377 MKK 379
>ref|NP_505077.1| Seven TM Receptor STR-139 (str-139) [Caenorhabditis elegans]
gi|7510827|pir||T29002 hypothetical protein ZC513.11 -
Caenorhabditis elegans gi|2921615|gb|AAC48273.1| Seven
tm receptor protein 139 [Caenorhabditis elegans]
Length = 328
Score = 32.3 bits (72), Expect = 6.6
Identities = 16/45 (35%), Positives = 24/45 (52%)
Frame = -1
Query: 640 VAHLFEAFFWLYSVFLSPEEFAVLMGSELCAVKLPFLFGAFVQHF 506
++ L FF+ Y V PE L GS+LC + +P + FV +F
Sbjct: 99 ISLLATQFFYRYLVICKPEHLCKLNGSKLCLLFVPTIILFFVWYF 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,150,857
Number of Sequences: 1393205
Number of extensions: 13756877
Number of successful extensions: 32674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 31560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32666
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
