Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004517A_C01 KMC004517A_c01
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98189.1| RAC1 [Lotus japonicus] 209 3e-53
dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arieti... 196 3e-49
gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum] 196 4e-49
sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780... 196 4e-49
gb|AAF28764.1|AF218381_1 small GTP binding protein RACDP [Oryza ... 194 1e-48
>emb|CAA98189.1| RAC1 [Lotus japonicus]
Length = 197
Score = 209 bits (533), Expect = 3e-53
Identities = 103/104 (99%), Positives = 104/104 (99%)
Frame = -1
Query: 801 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 622
ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP
Sbjct: 94 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 153
Query: 621 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKSCSIL 490
AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKR+AQKSCSIL
Sbjct: 154 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSCSIL 197
>dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arietinum]
Length = 197
Score = 196 bits (499), Expect = 3e-49
Identities = 96/104 (92%), Positives = 98/104 (93%)
Frame = -1
Query: 801 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 622
ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDK F DHPGAVPITTAQGEELRKLIGAP
Sbjct: 94 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAVPITTAQGEELRKLIGAP 153
Query: 621 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKSCSIL 490
YIECSSKTQ+NVKAVFDAAIKVVLQPPKQKK KRK QK+CSIL
Sbjct: 154 VYIECSSKTQKNVKAVFDAAIKVVLQPPKQKKTKRKGQKACSIL 197
>gb|AAK31299.1| Rac-like GTPase 1 [Nicotiana tabacum]
Length = 197
Score = 196 bits (497), Expect = 4e-49
Identities = 94/104 (90%), Positives = 99/104 (94%)
Frame = -1
Query: 801 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 622
EN++KKWIPEL+HYAPGVPI+LVGTKLDLRDDK F DHPGAVPITTAQGEELRK IGAP
Sbjct: 94 ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKTIGAP 153
Query: 621 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKSCSIL 490
AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKK KAQK+CSIL
Sbjct: 154 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKAQKACSIL 197
>sp|Q39435|RAC1_BETVU RAC-LIKE GTP BINDING PROTEIN RHO1 gi|974780|emb|CAA89050.1| small G
protein [Beta vulgaris]
Length = 197
Score = 196 bits (497), Expect = 4e-49
Identities = 94/104 (90%), Positives = 99/104 (94%)
Frame = -1
Query: 801 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 622
EN++KKWIPEL+HYAPGVPI+LVGTKLDLRDDK F DHPGAVPITTAQGEELRKLIGAP
Sbjct: 94 ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAP 153
Query: 621 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKSCSIL 490
AYIECSSKTQQNVKAVFDAAIKVVLQPPK KKKK KAQK+CSIL
Sbjct: 154 AYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKACSIL 197
>gb|AAF28764.1|AF218381_1 small GTP binding protein RACDP [Oryza sativa subsp. japonica]
gi|13487163|gb|AAK27450.1|AF329814_1 small GTP binding
protein RACDP [Oryza sativa subsp. japonica]
Length = 197
Score = 194 bits (494), Expect = 1e-48
Identities = 93/104 (89%), Positives = 99/104 (94%)
Frame = -1
Query: 801 ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 622
EN++KKWIPELRHYAPGVPIILVGTKLDLRDDK F DHPGAVPI+TAQGEELRKLIGA
Sbjct: 94 ENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAA 153
Query: 621 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKSCSIL 490
AYIECSSKTQQN+KAVFDAAIKVVLQPPKQKKKK+KAQK C+IL
Sbjct: 154 AYIECSSKTQQNIKAVFDAAIKVVLQPPKQKKKKKKAQKGCAIL 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,824,692
Number of Sequences: 1393205
Number of extensions: 14768336
Number of successful extensions: 41624
Number of sequences better than 10.0: 680
Number of HSP's better than 10.0 without gapping: 39558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41174
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
