Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004516A_C01 KMC004516A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08784.1|AC016780_14 Putative epimerase/dehydratase [Oryza ... 130 6e-30
ref|NP_198236.1| epimerase/dehydratase - like protein; protein i... 124 5e-28
gb|ZP_00048134.1| hypothetical protein [Magnetospirillum magneto... 45 3e-04
emb|CAD62190.1| Ata17 protein [Saccharothrix mutabilis subsp. ca... 43 0.002
gb|AAG02361.1|AF210249_20 sugar epimerase BlmG [Streptomyces ver... 40 0.013
>gb|AAM08784.1|AC016780_14 Putative epimerase/dehydratase [Oryza sativa]
Length = 378
Score = 130 bits (328), Expect = 6e-30
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = -3
Query: 475 SDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAQGVDTAIYGSSKVVQTQAPVQL 296
SDNTLIKEKLGWAPTMKLKDGLR TYFWIKEQ+EKEK QGVD A YGSSKVV TQAPVQL
Sbjct: 309 SDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQL 368
Query: 295 GSLRAADGKE 266
GSLRAADGKE
Sbjct: 369 GSLRAADGKE 378
>ref|NP_198236.1| epimerase/dehydratase - like protein; protein id: At5g28840.1,
supported by cDNA: gi_16323112, supported by cDNA:
gi_16323179 [Arabidopsis thaliana]
gi|16323113|gb|AAL15291.1| AT5g28840/F7P1_20
[Arabidopsis thaliana] gi|16323180|gb|AAL15324.1|
AT5g28840/F7P1_20 [Arabidopsis thaliana]
gi|21436019|gb|AAM51587.1| AT5g28840/F7P1_20
[Arabidopsis thaliana]
Length = 377
Score = 124 bits (311), Expect = 5e-28
Identities = 59/70 (84%), Positives = 65/70 (92%)
Frame = -3
Query: 475 SDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAQGVDTAIYGSSKVVQTQAPVQL 296
SDN LIKEKLGWAP M+LK+GLRITYFWIKEQ+EKEKA+G D ++YGSSKVV TQAPVQL
Sbjct: 308 SDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQL 367
Query: 295 GSLRAADGKE 266
GSLRAADGKE
Sbjct: 368 GSLRAADGKE 377
>gb|ZP_00048134.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 106
Score = 45.4 bits (106), Expect = 3e-04
Identities = 18/35 (51%), Positives = 27/35 (76%)
Frame = -3
Query: 475 SDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEK 371
SDNTL++E LGW P + L++GL+ TY WI+ Q+ +
Sbjct: 64 SDNTLLRETLGWEPGIHLREGLKPTYRWIETQVRE 98
>emb|CAD62190.1| Ata17 protein [Saccharothrix mutabilis subsp. capreolus]
Length = 384
Score = 42.7 bits (99), Expect = 0.002
Identities = 18/57 (31%), Positives = 32/57 (55%)
Frame = -3
Query: 475 SDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAQGVDTAIYGSSKVVQTQAP 305
SDN L++ +LGW P+ L+ G+ TY WI+ +E+ + +S++V+ P
Sbjct: 331 SDNALLRAELGWEPSTPLETGMAATYHWIRSDIERRAG-----TVQAASEIVRVGDP 382
>gb|AAG02361.1|AF210249_20 sugar epimerase BlmG [Streptomyces verticillus]
Length = 325
Score = 40.0 bits (92), Expect = 0.013
Identities = 19/36 (52%), Positives = 22/36 (60%)
Frame = -3
Query: 475 SDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKE 368
SDNT +E LGWAP L GL TY WI+ Q+ E
Sbjct: 284 SDNTRCRELLGWAPETSLAAGLERTYPWIERQVLAE 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,685,612
Number of Sequences: 1393205
Number of extensions: 7472648
Number of successful extensions: 15385
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 15099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15382
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
