Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004511A_C01 KMC004511A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM14091.1| unknown protein [Arabidopsis thaliana] 195 4e-49
ref|NP_189238.2| unknown protein; protein id: At3g26090.1, suppo... 195 4e-49
dbj|BAB01074.1| gene_id:MPE11.28~unknown protein [Arabidopsis th... 195 4e-49
gb|AAC40154.1| RGS12 PDZ-less variant; Regulator of G-protein si... 39 0.064
ref|NP_062212.1| regulator of G-protein signaling 12 [Rattus nor... 39 0.064
>gb|AAM14091.1| unknown protein [Arabidopsis thaliana]
Length = 459
Score = 195 bits (495), Expect = 4e-49
Identities = 96/156 (61%), Positives = 123/156 (78%), Gaps = 1/156 (0%)
Frame = -2
Query: 589 RQSFMAFADSCLAGESVFFFDEVHELSKIPEDDCVRRIYMARHIIEKYIVPGAVMEVNIS 410
R SFM FADSC AGE++ FF+EV+E KIPEDD +RRIYMARHI+EK+IV GA ME+N+S
Sbjct: 306 RHSFMEFADSCYAGETLHFFEEVYEHGKIPEDDSIRRIYMARHIMEKFIVAGAEMELNLS 365
Query: 409 HRSRQEIMSTSNLARPDLFRNALNEIMQLMKTNLVSDYWSSMFFLKFQEESNMRLNDYEL 230
H++RQEI++T +L DLF+NALNE+MQL+K NLV DYWSS++F+KF+EE + +E
Sbjct: 366 HKTRQEILTTQDLTHTDLFKNALNEVMQLIKMNLVRDYWSSIYFIKFKEEESC----HEA 421
Query: 229 EQMTVCNF-SPRLSSVHGSDDPFHQEHLLKSSGCGN 125
+F SPRLSSV GSDDPF+QEH+ KSS C +
Sbjct: 422 MHKERYSFSSPRLSSVQGSDDPFYQEHMSKSSRCSS 457
>ref|NP_189238.2| unknown protein; protein id: At3g26090.1, supported by cDNA:
gi_20268775 [Arabidopsis thaliana]
gi|23297446|gb|AAN12971.1| unknown protein [Arabidopsis
thaliana]
Length = 459
Score = 195 bits (495), Expect = 4e-49
Identities = 96/159 (60%), Positives = 121/159 (75%), Gaps = 4/159 (2%)
Frame = -2
Query: 589 RQSFMAFADSCLAGESVFFFDEVHELSKIPEDDCVRRIYMARHIIEKYIVPGAVMEVNIS 410
R SFM FADSC AGE++ FF+EV+E KIPEDD +RRIYMARHI+EK+IV GA ME+N+S
Sbjct: 306 RHSFMEFADSCYAGETLHFFEEVYEHGKIPEDDSIRRIYMARHIMEKFIVAGAEMELNLS 365
Query: 409 HRSRQEIMSTSNLARPDLFRNALNEIMQLMKTNLVSDYWSSMFFLKFQEESN----MRLN 242
H++RQEI++T +L DLF+NALNE+MQL+K NLV DYWSS++F+KF+EE + M
Sbjct: 366 HKTRQEILTTQDLTHTDLFKNALNEVMQLIKMNLVRDYWSSIYFIKFKEEESCHEAMHKE 425
Query: 241 DYELEQMTVCNFSPRLSSVHGSDDPFHQEHLLKSSGCGN 125
Y SPRLSSV GSDDPF+QEH+ KSS C +
Sbjct: 426 GYSFS-------SPRLSSVQGSDDPFYQEHMSKSSRCSS 457
>dbj|BAB01074.1| gene_id:MPE11.28~unknown protein [Arabidopsis thaliana]
Length = 305
Score = 195 bits (495), Expect = 4e-49
Identities = 96/159 (60%), Positives = 121/159 (75%), Gaps = 4/159 (2%)
Frame = -2
Query: 589 RQSFMAFADSCLAGESVFFFDEVHELSKIPEDDCVRRIYMARHIIEKYIVPGAVMEVNIS 410
R SFM FADSC AGE++ FF+EV+E KIPEDD +RRIYMARHI+EK+IV GA ME+N+S
Sbjct: 152 RHSFMEFADSCYAGETLHFFEEVYEHGKIPEDDSIRRIYMARHIMEKFIVAGAEMELNLS 211
Query: 409 HRSRQEIMSTSNLARPDLFRNALNEIMQLMKTNLVSDYWSSMFFLKFQEESN----MRLN 242
H++RQEI++T +L DLF+NALNE+MQL+K NLV DYWSS++F+KF+EE + M
Sbjct: 212 HKTRQEILTTQDLTHTDLFKNALNEVMQLIKMNLVRDYWSSIYFIKFKEEESCHEAMHKE 271
Query: 241 DYELEQMTVCNFSPRLSSVHGSDDPFHQEHLLKSSGCGN 125
Y SPRLSSV GSDDPF+QEH+ KSS C +
Sbjct: 272 GYSFS-------SPRLSSVQGSDDPFYQEHMSKSSRCSS 303
>gb|AAC40154.1| RGS12 PDZ-less variant; Regulator of G-protein signaling-12 [Rattus
norvegicus]
Length = 739
Score = 38.5 bits (88), Expect = 0.064
Identities = 26/101 (25%), Positives = 42/101 (40%)
Frame = -2
Query: 580 FMAFADSCLAGESVFFFDEVHELSKIPEDDCVRRIYMARHIIEKYIVPGAVMEVNISHRS 401
F F + E++ F+ S +P D Y AR I K++ A VNI ++
Sbjct: 81 FSDFLRKEFSEENILFWQACECFSHVPAHDKKELSYRAREIFSKFLCSKATTPVNIDSQA 140
Query: 400 RQEIMSTSNLARPDLFRNALNEIMQLMKTNLVSDYWSSMFF 278
Q N PD+F+ +I LMK + + + S +
Sbjct: 141 -QLADDILNAPHPDMFKEQQLQIFNLMKFDSYTRFLKSQLY 180
>ref|NP_062212.1| regulator of G-protein signaling 12 [Rattus norvegicus]
gi|2500169|sp|O08774|RGSC_RAT Regulator of G-protein
signaling 12 (RGS12) gi|7513978|pir||JC5502 G-protein
signaling regulator 12 - rat gi|2088558|gb|AAC53176.1|
regulator of G-protein signalling 12 [Rattus norvegicus]
Length = 1387
Score = 38.5 bits (88), Expect = 0.064
Identities = 26/101 (25%), Positives = 42/101 (40%)
Frame = -2
Query: 580 FMAFADSCLAGESVFFFDEVHELSKIPEDDCVRRIYMARHIIEKYIVPGAVMEVNISHRS 401
F F + E++ F+ S +P D Y AR I K++ A VNI ++
Sbjct: 729 FSDFLRKEFSEENILFWQACECFSHVPAHDKKELSYRAREIFSKFLCSKATTPVNIDSQA 788
Query: 400 RQEIMSTSNLARPDLFRNALNEIMQLMKTNLVSDYWSSMFF 278
Q N PD+F+ +I LMK + + + S +
Sbjct: 789 -QLADDILNAPHPDMFKEQQLQIFNLMKFDSYTRFLKSQLY 828
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,458,940
Number of Sequences: 1393205
Number of extensions: 9997849
Number of successful extensions: 26296
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 25418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26285
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
