Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004508A_C01 KMC004508A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188458.1| hypothetical protein; protein id: At3g18295.1 [... 87 1e-16
dbj|BAB85370.1| P0519D04.29 [Oryza sativa (japonica cultivar-gro... 77 8e-14
dbj|BAB85367.1| P0519D04.26 [Oryza sativa (japonica cultivar-gro... 76 1e-13
ref|NP_175309.1| hypothetical protein; protein id: At1g48770.1 [... 75 2e-13
gb|AAK26011.1|AF360301_1 unknown protein [Arabidopsis thaliana] 73 1e-12
>ref|NP_188458.1| hypothetical protein; protein id: At3g18295.1 [Arabidopsis
thaliana]
Length = 216
Score = 86.7 bits (213), Expect = 1e-16
Identities = 44/67 (65%), Positives = 53/67 (78%), Gaps = 1/67 (1%)
Frame = -1
Query: 426 DEKIQFSVSLSKEEVEPDFWALAGTRPPRRPKKRPRNVQKPLTTLYPGLWLS-EIPHDSY 250
+EK++FSVSL +EE+E DF AL G RPPRRPKKRPR VQK + TL+PGLWL+ E+ DSY
Sbjct: 149 NEKVKFSVSLLREEIEQDFSALIGKRPPRRPKKRPRLVQKQMNTLFPGLWLAEEVTADSY 208
Query: 249 QVADVPE 229
DVPE
Sbjct: 209 ---DVPE 212
>dbj|BAB85370.1| P0519D04.29 [Oryza sativa (japonica cultivar-group)]
Length = 245
Score = 77.0 bits (188), Expect = 8e-14
Identities = 35/62 (56%), Positives = 48/62 (76%)
Frame = -1
Query: 423 EKIQFSVSLSKEEVEPDFWALAGTRPPRRPKKRPRNVQKPLTTLYPGLWLSEIPHDSYQV 244
E+ F+V+L+ EE+E D +AL G RP RRP+KRPR VQ+ L +L+PGLWL+EI D+Y+V
Sbjct: 183 ERPPFAVALAAEEIEEDMYALTGGRPRRRPRKRPRVVQRQLDSLFPGLWLTEITADAYKV 242
Query: 243 AD 238
D
Sbjct: 243 PD 244
>dbj|BAB85367.1| P0519D04.26 [Oryza sativa (japonica cultivar-group)]
Length = 370
Score = 76.3 bits (186), Expect = 1e-13
Identities = 35/72 (48%), Positives = 50/72 (68%)
Frame = -1
Query: 453 DKNKKKMVMDEKIQFSVSLSKEEVEPDFWALAGTRPPRRPKKRPRNVQKPLTTLYPGLWL 274
D+ + +K FS+ LSKEE+ DF A+ GTRPPRRPKKRPR VQ+ L LYPGL L
Sbjct: 135 DRAPSPLAATKKRVFSIVLSKEEIGQDFKAIRGTRPPRRPKKRPRTVQRQLDLLYPGLCL 194
Query: 273 SEIPHDSYQVAD 238
+++ ++Y++ +
Sbjct: 195 ADLTPETYKIEE 206
>ref|NP_175309.1| hypothetical protein; protein id: At1g48770.1 [Arabidopsis
thaliana] gi|12597808|gb|AAG60119.1|AC073555_3
hypothetical protein [Arabidopsis thaliana]
Length = 179
Score = 75.5 bits (184), Expect = 2e-13
Identities = 38/81 (46%), Positives = 55/81 (66%), Gaps = 12/81 (14%)
Frame = -1
Query: 447 NKKKMVMD----------EKIQFSVSLSKEEVEPDFWALAGTRPPRRPKKRPRNVQKPLT 298
NK++ ++D EK +FS++LS++E+E DF + G +PP+RPKKRPR VQK L
Sbjct: 99 NKRRSIIDNEDGGGDKKNEKSKFSIALSRDEIEQDFSFVFGKKPPKRPKKRPRLVQKKLN 158
Query: 297 TLYPGLWLS--EIPHDSYQVA 241
T++PGLWL+ E+ DSY A
Sbjct: 159 TIFPGLWLNEEEVTIDSYNGA 179
>gb|AAK26011.1|AF360301_1 unknown protein [Arabidopsis thaliana]
Length = 324
Score = 73.2 bits (178), Expect = 1e-12
Identities = 30/63 (47%), Positives = 48/63 (75%)
Frame = -1
Query: 426 DEKIQFSVSLSKEEVEPDFWALAGTRPPRRPKKRPRNVQKPLTTLYPGLWLSEIPHDSYQ 247
++K + S+SLSK E++ D +AL G++P RRPKKR +NVQK L L+PGLW+ + ++Y+
Sbjct: 260 EKKPRLSISLSKLEIDEDIYALTGSKPSRRPKKRAKNVQKQLDVLFPGLWMGNVSSEAYK 319
Query: 246 VAD 238
V++
Sbjct: 320 VSE 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,585,392
Number of Sequences: 1393205
Number of extensions: 11009831
Number of successful extensions: 42387
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 33837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41257
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
