Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004507A_C01 KMC004507A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191524.1| putative protein; protein id: At3g59650.1, supp... 150 6e-36
gb|AAN77300.1| Unknown protein [Oryza sativa (japonica cultivar-... 144 4e-34
gb|EAA29826.1| hypothetical protein [Neurospora crassa] 67 1e-10
ref|NP_492686.1| NADH-ubiquinone oxidoreductase B8 [Caenorhabdit... 49 3e-05
ref|NP_595697.1| hypothetical protein [Schizosaccharomyces pombe... 42 0.005
>ref|NP_191524.1| putative protein; protein id: At3g59650.1, supported by cDNA:
92264. [Arabidopsis thaliana] gi|11358056|pir||T49306
hypothetical protein T16L24.200 - Arabidopsis thaliana
gi|6996301|emb|CAB75462.1| putative protein [Arabidopsis
thaliana] gi|21617971|gb|AAM67021.1| unknown
[Arabidopsis thaliana] gi|27808540|gb|AAO24550.1|
At3g59650 [Arabidopsis thaliana]
Length = 119
Score = 150 bits (380), Expect = 6e-36
Identities = 67/85 (78%), Positives = 78/85 (90%)
Frame = -1
Query: 510 PEFKEKNPQLEVVTEMIRGQHPHLKGFYENQNQRVICVKNMDPEDILLQATRLRNALGRK 331
P KEKNPQLEV+TE+ RGQHP+LKG Y N+N+RV+CVKNMDPE++LL ATRLRN+LGRK
Sbjct: 35 PALKEKNPQLEVITELSRGQHPYLKGIYRNRNERVVCVKNMDPEEVLLNATRLRNSLGRK 94
Query: 330 VIKLRTRHVTKHPSVQGTWTTAVTY 256
V+KLRTRHVTKHPSVQGTWTTAV +
Sbjct: 95 VVKLRTRHVTKHPSVQGTWTTAVKF 119
>gb|AAN77300.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 119
Score = 144 bits (364), Expect = 4e-34
Identities = 65/81 (80%), Positives = 75/81 (92%)
Frame = -1
Query: 510 PEFKEKNPQLEVVTEMIRGQHPHLKGFYENQNQRVICVKNMDPEDILLQATRLRNALGRK 331
P FKEKNP LEVVTE++RGQHP+LKG Y+N N+RV+CV+N+ PEDILLQATRLRN+LGRK
Sbjct: 35 PAFKEKNPHLEVVTELVRGQHPNLKGIYKNHNERVVCVRNLAPEDILLQATRLRNSLGRK 94
Query: 330 VIKLRTRHVTKHPSVQGTWTT 268
V+KLRTRHVTK PSVQGTWTT
Sbjct: 95 VVKLRTRHVTKRPSVQGTWTT 115
>gb|EAA29826.1| hypothetical protein [Neurospora crassa]
Length = 138
Score = 67.0 bits (162), Expect = 1e-10
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = -1
Query: 510 PEFKEKNPQLEVVTEMIRGQHPHLKGFYENQNQRVICVKNMDPEDILLQATRLRNALGRK 331
P+F NPQ+E V +HP L G Y N + ICV+NM+P +IL +A LR+A G K
Sbjct: 50 PKFAAANPQIEFVVSPRPAKHPILMGHYINGRTKAICVRNMEPLEILKKAELLRDASGEK 109
Query: 330 VIKLRTRHVTKHPSVQGTWT 271
K + + +PSV+G W+
Sbjct: 110 PQKFKKPVTSTNPSVRGVWS 129
>ref|NP_492686.1| NADH-ubiquinone oxidoreductase B8 [Caenorhabditis elegans]
gi|7496448|pir||T19441 hypothetical protein C25A1.13 -
Caenorhabditis elegans gi|3874440|emb|CAB02765.1|
Hypothetical protein C25A1.13 [Caenorhabditis elegans]
Length = 189
Score = 48.9 bits (115), Expect = 3e-05
Identities = 24/79 (30%), Positives = 38/79 (47%)
Frame = -1
Query: 507 EFKEKNPQLEVVTEMIRGQHPHLKGFYENQNQRVICVKNMDPEDILLQATRLRNALGRKV 328
E KNP + + + +R +P ++ Y N I KNM +++ L + G V
Sbjct: 72 EIGRKNPSVVIYAQPVRNSNPSIRAEYGNGRTLQINAKNMTQDEVSKDVHLLFSRSGEPV 131
Query: 327 IKLRTRHVTKHPSVQGTWT 271
+KL +R PS+QG WT
Sbjct: 132 VKLESRQSALVPSIQGQWT 150
>ref|NP_595697.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491460|pir||T39803 hypothetical protein SPBC19C2.12
- fission yeast (Schizosaccharomyces pombe)
gi|5689994|emb|CAB52039.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 145
Score = 41.6 bits (96), Expect = 0.005
Identities = 18/63 (28%), Positives = 35/63 (54%)
Frame = -1
Query: 459 RGQHPHLKGFYENQNQRVICVKNMDPEDILLQATRLRNALGRKVIKLRTRHVTKHPSVQG 280
+G+HP ++ +Y ++VIC + M I +A R++ G K ++ + +PSV+G
Sbjct: 66 QGKHPLIRAYYNTGREKVICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRG 125
Query: 279 TWT 271
W+
Sbjct: 126 IWS 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,254,554
Number of Sequences: 1393205
Number of extensions: 9040323
Number of successful extensions: 25424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25399
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
