Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004506A_C01 KMC004506A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680778.1| similar to Probable microsomal signal peptidase... 142 3e-33
ref|NP_565535.1| Expressed protein; protein id: At2g22425.1, sup... 136 1e-31
sp|Q9Y6A9|SP12_HUMAN Microsomal signal peptidase 12 kDa subunit ... 74 1e-12
dbj|BAC38696.1| unnamed protein product [Mus musculus] 74 1e-12
ref|XP_214276.1| similar to Microsomal signal peptidase 12 kDa s... 73 2e-12
>ref|NP_680778.1| similar to Probable microsomal signal peptidase 12 kDa subunit (EC;
protein id: At4g40042.1 [Arabidopsis thaliana]
Length = 155
Score = 142 bits (357), Expect = 3e-33
Identities = 69/96 (71%), Positives = 75/96 (77%)
Frame = -3
Query: 473 FTKMDWQGQKLAEQLMQILLLAFAVVAFAGGYFMASFQTMMLTYAGGVVFTTLVTVPNWP 294
F MDWQGQKLAEQLMQILLL AVV+F GY ASF+ MML YAGGVV TTL+T+PNWP
Sbjct: 60 FLDMDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWP 119
Query: 293 LFNRHPLKWLDPSEVEKHPKPQPSVNVAPKKKPTKK 186
FNRH LKWLDPSE EKHPKPQ V + KK +KK
Sbjct: 120 CFNRHHLKWLDPSEAEKHPKPQVVVVSSKKKSSSKK 155
>ref|NP_565535.1| Expressed protein; protein id: At2g22425.1, supported by cDNA:
38277., supported by cDNA: gi_16226377 [Arabidopsis
thaliana] gi|20140132|sp|Q944J0|SP12_ARATH Probable
microsomal signal peptidase 12 kDa subunit (SPase 12 kDa
subunit) (SPC12) gi|16226378|gb|AAL16151.1|AF428383_1
unknown protein [Arabidopsis thaliana]
gi|20197889|gb|AAM15302.1| Expressed protein
[Arabidopsis thaliana] gi|21593349|gb|AAM65298.1|
probable microsomal signal peptidase 12 kDa subunit
(SPase 12 kDa subunit) (SPC12) [Arabidopsis thaliana]
gi|23505761|gb|AAN28740.1| At2g22807/At2g22807
[Arabidopsis thaliana]
Length = 92
Score = 136 bits (343), Expect = 1e-31
Identities = 68/93 (73%), Positives = 74/93 (79%)
Frame = -3
Query: 464 MDWQGQKLAEQLMQILLLAFAVVAFAGGYFMASFQTMMLTYAGGVVFTTLVTVPNWPLFN 285
MDWQGQKL EQLMQILL+ VVA GY SF+TMML YAGGVV TTLVTVPNWP +N
Sbjct: 1 MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60
Query: 284 RHPLKWLDPSEVEKHPKPQPSVNVAPKKKPTKK 186
HPLKWLDPSE EKHPKP+ V+VA KKK +KK
Sbjct: 61 LHPLKWLDPSEAEKHPKPE-VVSVASKKKFSKK 92
>sp|Q9Y6A9|SP12_HUMAN Microsomal signal peptidase 12 kDa subunit (SPase 12 kDa subunit)
(SPC12) (HSPC033) gi|1588365|prf||2208369A signal
peptidase:SUBUNIT=12kD
Length = 102
Score = 73.9 bits (180), Expect = 1e-12
Identities = 35/77 (45%), Positives = 48/77 (61%)
Frame = -3
Query: 482 SSRFTKMDWQGQKLAEQLMQILLLAFAVVAFAGGYFMASFQTMMLTYAGGVVFTTLVTVP 303
SS T+MD++GQKLAEQ+ Q ++L A+V F GY F + G F+ L+T+P
Sbjct: 6 SSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLP 65
Query: 302 NWPLFNRHPLKWLDPSE 252
WP++ RHPLKWL E
Sbjct: 66 PWPIYRRHPLKWLPVQE 82
>dbj|BAC38696.1| unnamed protein product [Mus musculus]
Length = 102
Score = 73.6 bits (179), Expect = 1e-12
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = -3
Query: 482 SSRFTKMDWQGQKLAEQLMQILLLAFAVVAFAGGYFMASFQTMMLTYAGGVVFTTLVTVP 303
SS T+MD++GQKLAEQ+ Q ++L A+V F GY F + G F+ L+T+P
Sbjct: 6 SSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLP 65
Query: 302 NWPLFNRHPLKWLDPSEVEKHPK 234
WP++ RHPLKWL ++ K
Sbjct: 66 PWPIYRRHPLKWLPVQDLGTEDK 88
>ref|XP_214276.1| similar to Microsomal signal peptidase 12 kDa subunit (SPase 12 kDa
subunit) (SPC12) (HSPC033) [Rattus norvegicus]
Length = 102
Score = 73.2 bits (178), Expect = 2e-12
Identities = 34/73 (46%), Positives = 47/73 (63%)
Frame = -3
Query: 482 SSRFTKMDWQGQKLAEQLMQILLLAFAVVAFAGGYFMASFQTMMLTYAGGVVFTTLVTVP 303
SS T+MD++GQKLAEQ+ Q ++L A+V F GY F + G F+ L+T+P
Sbjct: 6 SSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLP 65
Query: 302 NWPLFNRHPLKWL 264
WP++ RHPLKWL
Sbjct: 66 PWPIYRRHPLKWL 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,297,509
Number of Sequences: 1393205
Number of extensions: 12752834
Number of successful extensions: 97535
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 57446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86742
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
