Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004505A_C01 KMC004505A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM47491.1| SUMO-1 activating enzyme E1 N subunit [Xenopus la... 32 4.1
ref|NP_506898.1| Nuclear Hormone Receptor family NHR-51, Nuclear... 31 6.9
pir||T23364 hypothetical protein K06B4.1 - Caenorhabditis elegans 31 6.9
gb|AAG15145.1| nuclear receptor NHR-51 [Caenorhabditis elegans] 31 6.9
>gb|AAM47491.1| SUMO-1 activating enzyme E1 N subunit [Xenopus laevis]
Length = 344
Score = 31.6 bits (70), Expect = 4.1
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2
Query: 381 LKPLHTDYRLMMRL*KFCTDKGRKKLPTNY 292
LK TDY L+ L KF TDKGR P++Y
Sbjct: 231 LKKTPTDYFLLQVLMKFRTDKGRDPQPSSY 260
>ref|NP_506898.1| Nuclear Hormone Receptor family NHR-51, Nuclear Hormone Receptor
family NHR-52 (nhr-51) [Caenorhabditis elegans]
gi|9367137|emb|CAB05760.2| C. elegans NHR-51 protein
(corresponding sequence K06B4.1) [Caenorhabditis
elegans]
Length = 387
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 220 CQLSGFDLCLTEALQY------GFK*NMDIIICRKLLPSFVCAKLSKPHH*SVVRVQWLE 381
C+ + CL +Q F+ +MD+ I R L+ +++ + H ++ +E
Sbjct: 73 CKACRYQKCLEMGMQAFPRRVKSFEESMDLKIQRMLMN---LSEMDEQRHWRMLNSYSIE 129
Query: 382 DPSLGNIISMSSKCKIVEK 438
DPSLG+++ S+ KI+ K
Sbjct: 130 DPSLGDVLVDSNVMKIMRK 148
>pir||T23364 hypothetical protein K06B4.1 - Caenorhabditis elegans
Length = 435
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 220 CQLSGFDLCLTEALQY------GFK*NMDIIICRKLLPSFVCAKLSKPHH*SVVRVQWLE 381
C+ + CL +Q F+ +MD+ I R L+ +++ + H ++ +E
Sbjct: 73 CKACRYQKCLEMGMQAFPRRVKSFEESMDLKIQRMLMN---LSEMDEQRHWRMLNSYSIE 129
Query: 382 DPSLGNIISMSSKCKIVEK 438
DPSLG+++ S+ KI+ K
Sbjct: 130 DPSLGDVLVDSNVMKIMRK 148
>gb|AAG15145.1| nuclear receptor NHR-51 [Caenorhabditis elegans]
Length = 323
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 220 CQLSGFDLCLTEALQY------GFK*NMDIIICRKLLPSFVCAKLSKPHH*SVVRVQWLE 381
C+ + CL +Q F+ +MD+ I R L+ +++ + H ++ +E
Sbjct: 9 CKACRYQKCLEMGMQAFPRRVKSFEESMDLKIQRMLMN---LSEMDEQRHWRMLNSYSIE 65
Query: 382 DPSLGNIISMSSKCKIVEK 438
DPSLG+++ S+ KI+ K
Sbjct: 66 DPSLGDVLVDSNVMKIMRK 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,720,700
Number of Sequences: 1393205
Number of extensions: 7120987
Number of successful extensions: 13249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13249
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
