Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004503A_C01 KMC004503A_c01
(1068 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567536.1| RRM-containing protein; protein id: At4g17720.1... 352 7e-96
pir||C71447 hypothetical protein - Arabidopsis thaliana gi|22451... 340 3e-92
ref|NP_199498.1| RRM-containing protein; protein id: At5g46870.1... 328 9e-89
dbj|BAA93036.1| ESTs D15336(C0474),C98053(C0474) correspond to a... 288 8e-77
gb|AAL58221.1|AC090882_24 putative splicing regulatory protein [... 280 2e-74
>ref|NP_567536.1| RRM-containing protein; protein id: At4g17720.1, supported by cDNA:
39922. [Arabidopsis thaliana] gi|21593540|gb|AAM65507.1|
putative splicing regulatory protein [Arabidopsis
thaliana] gi|28393291|gb|AAO42073.1| putative
RRM-containing protein [Arabidopsis thaliana]
gi|28827694|gb|AAO50691.1| putative RRM-containing
protein [Arabidopsis thaliana]
Length = 313
Score = 352 bits (902), Expect = 7e-96
Identities = 188/275 (68%), Positives = 227/275 (82%), Gaps = 3/275 (1%)
Frame = -3
Query: 1009 MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 830
MT+ T+KVSNVSLGA++RD+KEFFSFSGDI Y+E QS ER+++AYVTFKD QGAETAVL
Sbjct: 1 MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60
Query: 829 LSGATIVDLPVSIALDPDYQVPPAALASSETE--GKGPSGPESALRKAEDVVTSMLAKGF 656
LSGATIVD V +++ PDYQ+ P ALAS E + K P +S LRKAEDVV+SMLAKGF
Sbjct: 61 LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120
Query: 655 ILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKISAGASVVSAGASVVTDRVRE 476
ILGKDA+ KAK++DEKHQL+STASAKV+S D+K+G T+KI+ G VV ++VRE
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVG-------EKVRE 173
Query: 475 VDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKT 296
VDQK+QVSEKTKSA A AEQ VS AGSAIMKNRYVLTGATWVTGAF+KVAKAA +VGQK
Sbjct: 174 VDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKA 233
Query: 295 KEKLESVQEEEKRKVEDQYAHV-LSESPKAAATSE 194
KEK+ +EE+KRKV D++A V LSESPKAA++++
Sbjct: 234 KEKVGMAEEEDKRKVVDEFARVHLSESPKAASSTQ 268
>pir||C71447 hypothetical protein - Arabidopsis thaliana
gi|2245131|emb|CAB10552.1| hypothetical protein
[Arabidopsis thaliana] gi|7268525|emb|CAB78775.1|
hypothetical protein [Arabidopsis thaliana]
Length = 321
Score = 340 bits (871), Expect = 3e-92
Identities = 186/281 (66%), Positives = 224/281 (79%), Gaps = 13/281 (4%)
Frame = -3
Query: 997 TIKVSNVSLGASERDIKEFFSFSGDIEYVEMQ----------SHDERSQIAYVTFKDSQG 848
T+KVSNVSLGA++RD+KEFFSFSGDI Y+E Q S ER+++AYVTFKD QG
Sbjct: 3 TVKVSNVSLGATDRDLKEFFSFSGDILYLETQRFLTLLTCLYSETERTKLAYVTFKDLQG 62
Query: 847 AETAVLLSGATIVDLPVSIALDPDYQVPPAALASSETE--GKGPSGPESALRKAEDVVTS 674
AETAVLLSGATIVD V +++ PDYQ+ P ALAS E + K P +S LRKAEDVV+S
Sbjct: 63 AETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSS 122
Query: 673 MLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKISAGASVVSAGASVV 494
MLAKGFILGKDA+ KAK++DEKHQL+STASAKV+S D+K+G T+KI+ G VV
Sbjct: 123 MLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVG------ 176
Query: 493 TDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAG 314
++VREVDQK+QVSEKTKSA A AEQ VS AGSAIMKNRYVLTGATWVTGAF+KVAKAA
Sbjct: 177 -EKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAE 235
Query: 313 DVGQKTKEKLESVQEEEKRKVEDQYAHV-LSESPKAAATSE 194
+VGQK KEK+ +EE+KRKV D++A V LSESPKAA++++
Sbjct: 236 EVGQKAKEKVGMAEEEDKRKVVDEFARVHLSESPKAASSTQ 276
>ref|NP_199498.1| RRM-containing protein; protein id: At5g46870.1 [Arabidopsis
thaliana] gi|8809670|dbj|BAA97221.1|
gene_id:MSD23.5~pir||C71447~similar to unknown protein
[Arabidopsis thaliana]
Length = 293
Score = 328 bits (841), Expect = 9e-89
Identities = 181/283 (63%), Positives = 222/283 (77%), Gaps = 9/283 (3%)
Frame = -3
Query: 997 TIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLSGA 818
T+KVSNVSL A+ERD+KEFFSFSGDI Y+E QS ++ S++AYVTFKD QGAETAVLL+G+
Sbjct: 3 TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 62
Query: 817 TIVDLPVSIALDPDYQVPPAALASSET--EGKGPSGPE----SALRKAEDVVTSMLAKGF 656
TIVD V++ + PDYQ+PP ALAS E+ E S P S RKAEDVV+ M++KGF
Sbjct: 63 TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 122
Query: 655 ILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKISAGASVVSAGASVVTDRVRE 476
+LGKDA+ KAK+LDEKHQL+STASA+V+S D+++G TEKI+ G +VVS ++V+E
Sbjct: 123 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVS-------EKVKE 175
Query: 475 VDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKT 296
VDQKFQV+EKTKSA A AEQ VS AGSAIMKNRYVLTGATWVTGAF++V+KAA +VGQK
Sbjct: 176 VDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKA 235
Query: 295 KEK--LESVQEEEKRKVEDQYAHV-LSESPKAAATSEVHSSKP 176
KEK L +EEEK+KV D+ A V L+ESPKA SE S P
Sbjct: 236 KEKVGLAEEEEEEKKKVVDEVAIVHLTESPKALDQSEQDSKLP 278
>dbj|BAA93036.1| ESTs D15336(C0474),C98053(C0474) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana DNA
chromosome 4, ESSA I contig fragment No. 9; hypothetical
protein. (Z97344) [Oryza sativa (japonica
cultivar-group)]
Length = 306
Score = 288 bits (738), Expect = 8e-77
Identities = 160/255 (62%), Positives = 192/255 (74%), Gaps = 10/255 (3%)
Frame = -3
Query: 997 TIKVSNVSLGASERDIKEFFSFSGDIEYVEMQ--------SHDERSQIAYVTFKDSQGAE 842
T+KV+NVSL A+ +DIKEFFSFSGDIE+VEMQ S DE SQ+AYVTFKD QGAE
Sbjct: 45 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQRFILPSIGSGDEWSQVAYVTFKDPQGAE 104
Query: 841 TAVLLSGATIVDLPVSIALDPDYQVPPAALASSETEGKGP--SGPESALRKAEDVVTSML 668
TA+LLSGATIVDL V IA P+YQ PP + A S + + KAEDVV++ML
Sbjct: 105 TALLLSGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTML 164
Query: 667 AKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKISAGASVVSAGASVVTD 488
AKGF LGKDAV KAK DEKH +STA AKV+SID+K+GL+EK + G S+V+ +
Sbjct: 165 AKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVN-------E 217
Query: 487 RVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDV 308
+V+E+DQKFQVS+KTKSAFA AEQKVSTAGSAIMKNRYV TGA+WVT AF+KVAKAA DV
Sbjct: 218 KVKEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDV 277
Query: 307 GQKTKEKLESVQEEE 263
G TKEK+ + + +
Sbjct: 278 GTMTKEKMAAEDQHK 292
>gb|AAL58221.1|AC090882_24 putative splicing regulatory protein [Oryza sativa (japonica
cultivar-group)]
Length = 284
Score = 280 bits (717), Expect = 2e-74
Identities = 151/286 (52%), Positives = 205/286 (70%)
Frame = -3
Query: 1009 MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 830
M ++T+KVSN+SL AS+R+I EFFSFSGDIEYVEMQS ERSQ+AYVTFKDSQGA+TAVL
Sbjct: 1 MEVRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVL 60
Query: 829 LSGATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFIL 650
LSGATIVD V I +YQ+PP A ++ G+ S ES +RKAEDVV+SMLAKGF+L
Sbjct: 61 LSGATIVDRSVIITPVVNYQLPPD--ARKQSAGEKSSSAESVVRKAEDVVSSMLAKGFVL 118
Query: 649 GKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKISAGASVVSAGASVVTDRVREVD 470
KDA+N A++ DE+H + S A+A V+S+D++ G++EKIS G ++V + +V+EVD
Sbjct: 119 SKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGS-------KVKEVD 171
Query: 469 QKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE 290
++QVSE TKSA A AEQK S A SAIM N+YV GA+W+T AF V KAAGD+ TK+
Sbjct: 172 DRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASWLTSAFGMVTKAAGDMSSMTKD 231
Query: 289 KLESVQEEEKRKVEDQYAHVLSESPKAAATSEVHSSKPAPAQGLIL 152
K++ +EE K + ++ ++S+ K +H +P+ + +L
Sbjct: 232 KVDRAEEERKAIMWEERNGLVSDYAK------IHLDEPSSWEPAVL 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 877,662,863
Number of Sequences: 1393205
Number of extensions: 19438187
Number of successful extensions: 71163
Number of sequences better than 10.0: 248
Number of HSP's better than 10.0 without gapping: 65887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70844
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 63740252037
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
