Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004500A_C01 KMC004500A_c01
(425 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA41472.1| GLP_422_83813_82623 [Giardia lamblia ATCC 50803] 33 1.1
gb|EAA37505.1| GLP_301_8562_8125 [Giardia lamblia ATCC 50803] 31 3.1
pir||H72557 hypothetical protein APE1748 - Aeropyrum pernix (str... 31 4.1
ref|NP_766434.1| RIKEN cDNA A230079K17; hypothetical protein A23... 30 6.9
ref|XP_136493.1| similar to Dynein heavy chain at 16F [Drosophil... 30 6.9
>gb|EAA41472.1| GLP_422_83813_82623 [Giardia lamblia ATCC 50803]
Length = 396
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 63 LNQSLSPINLTDEHPPTTREDKNTGESNLASTCL-QYKHNP 182
+ Q L+PIN + P +R +G S+ +STC+ +YK+NP
Sbjct: 178 IQQPLTPINFSLPGPRYSRSRATSGSSSGSSTCIRKYKYNP 218
>gb|EAA37505.1| GLP_301_8562_8125 [Giardia lamblia ATCC 50803]
Length = 145
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 42 RLGASFL-LNQSLSPINLTDEHPPTTREDKNTGESNLASTCLQYKHNPRG 188
R G FL L + + +++ + PT RED N NL Y+HN G
Sbjct: 38 RTGVCFLFLMHTSASLSINENADPTVREDMNAIMHNLVPDSSNYRHNYEG 87
>pir||H72557 hypothetical protein APE1748 - Aeropyrum pernix (strain K1)
gi|5105436|dbj|BAA80749.1| 181aa long hypothetical
protein [Aeropyrum pernix]
Length = 181
Score = 30.8 bits (68), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 90 LTDEHPPTTREDKNTGESNLASTCLQYKHNPRG 188
LT +HPP+TR ++ L S L ++H PRG
Sbjct: 143 LTSQHPPSTRAASQRHQA-LCSESLAWRHRPRG 174
>ref|NP_766434.1| RIKEN cDNA A230079K17; hypothetical protein A230079K17 [Mus
musculus] gi|26332937|dbj|BAC30186.1| unnamed protein
product [Mus musculus]
Length = 525
Score = 30.0 bits (66), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +1
Query: 247 EKH*ISSNKCSWSKRVQCTTYXLLTIADHKVR 342
EKH ++S K +KR+QC + L + D K+R
Sbjct: 302 EKHQLASRKKLATKRLQCASVLLTVLEDEKIR 333
>ref|XP_136493.1| similar to Dynein heavy chain at 16F [Drosophila melanogaster] [Mus
musculus]
Length = 3635
Score = 30.0 bits (66), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +1
Query: 247 EKH*ISSNKCSWSKRVQCTTYXLLTIADHKVR 342
EKH ++S K +KR+QC + L + D K+R
Sbjct: 2509 EKHQLASRKKLATKRLQCASVLLTVLEDEKIR 2540
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,353,982
Number of Sequences: 1393205
Number of extensions: 5930359
Number of successful extensions: 9995
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9995
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
