Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004499A_C01 KMC004499A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196180.1| nucleic acid binding protein-like; protein id: ... 132 2e-30
ref|NP_187729.1| putative nucleic acid binding protein; protein ... 124 6e-28
gb|AAO60037.1| putative PHD-finger domain containing protein [Or... 120 8e-27
gb|AAO65855.1| putative PHD-type zinc finger protein [Oryza sati... 120 8e-27
dbj|BAC21510.1| putative nucleic acid binding protein [Oryza sat... 117 7e-26
>ref|NP_196180.1| nucleic acid binding protein-like; protein id: At5g05610.1,
supported by cDNA: 111750. [Arabidopsis thaliana]
gi|10178138|dbj|BAB11550.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|21536795|gb|AAM61127.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 241
Score = 132 bits (333), Expect = 2e-30
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = -3
Query: 493 YEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCS 314
YE+EDDEH +TLCGSCGGNY DEFWI CD+CERWYHGKCVKITPAKAESIKQYKCPSC
Sbjct: 176 YEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCC 235
Query: 313 MRRGR 299
++GR
Sbjct: 236 TKKGR 240
>ref|NP_187729.1| putative nucleic acid binding protein; protein id: At3g11200.1,
supported by cDNA: 13297., supported by cDNA:
gi_16604429 [Arabidopsis thaliana]
gi|6016679|gb|AAF01506.1|AC009991_2 putative nucleic
acid binding protein [Arabidopsis thaliana]
gi|12321890|gb|AAG50986.1|AC073395_28 PHD-finger
protein, putative; 47584-45553 [Arabidopsis thaliana]
gi|16604430|gb|AAL24221.1| At3g11200/F11B9.12
[Arabidopsis thaliana] gi|21537350|gb|AAM61691.1|
putative nucleic acid binding protein [Arabidopsis
thaliana] gi|23505823|gb|AAN28771.1| At3g11200/F11B9.12
[Arabidopsis thaliana]
Length = 246
Score = 124 bits (311), Expect = 6e-28
Identities = 50/64 (78%), Positives = 57/64 (88%)
Frame = -3
Query: 490 EEEDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSM 311
EEE+DEH +TLCGSCGG+Y +EFWI CD+CERWYHGKCVKITPAKAESIKQYKCP C
Sbjct: 182 EEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPCCA 241
Query: 310 RRGR 299
++GR
Sbjct: 242 KKGR 245
>gb|AAO60037.1| putative PHD-finger domain containing protein [Oryza sativa
(japonica cultivar-group)]
Length = 247
Score = 120 bits (301), Expect = 8e-27
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -3
Query: 493 YEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCS 314
YE++D+EH+ET CG+CGG YNA+EFWIGCDICERW+HGKCV+ITPAKAE IK YKCP CS
Sbjct: 179 YEDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 238
>gb|AAO65855.1| putative PHD-type zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 245
Score = 120 bits (301), Expect = 8e-27
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -3
Query: 493 YEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCS 314
YE++D+EH+ET CG+CGG YNA+EFWIGCDICERW+HGKCV+ITPAKAE IK YKCP CS
Sbjct: 177 YEDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 236
>dbj|BAC21510.1| putative nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 244
Score = 117 bits (293), Expect = 7e-26
Identities = 46/57 (80%), Positives = 53/57 (92%)
Frame = -3
Query: 484 EDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCS 314
+++EHSETLCG+CGG YNA+EFWIGCDICERW+HGKCV+ITPAKAE IK YKCP CS
Sbjct: 181 DEEEHSETLCGTCGGRYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,793,644
Number of Sequences: 1393205
Number of extensions: 9702690
Number of successful extensions: 23928
Number of sequences better than 10.0: 349
Number of HSP's better than 10.0 without gapping: 22691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23884
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
