Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004492A_C01 KMC004492A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65081.1| amino acid permease-like protein [Arabidopsis tha... 76 2e-13
ref|NP_567977.1| amino acid permease - like protein; protein id:... 76 2e-13
pir||T04965 amino acid transport protein homolog T12J5.50 - Arab... 76 2e-13
dbj|BAA04838.1| ORF [Lilium longiflorum] 69 4e-11
dbj|BAA82706.1| amino acid transporter-like protein 1 [Arabidops... 47 1e-04
>gb|AAM65081.1| amino acid permease-like protein [Arabidopsis thaliana]
Length = 456
Score = 76.3 bits (186), Expect = 2e-13
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = -2
Query: 491 CFMWLSIKKPRVKGVVWWFNLALGCLGMFLSVLLVAAAIKALADKGLHANFYKP 330
CFMW+SIKKP+ K +W FN+ +GCLG LSVLL+ A+ LA KGLHANF++P
Sbjct: 403 CFMWISIKKPQRKSPMWLFNVLVGCLGASLSVLLLVASAMRLAQKGLHANFFRP 456
>ref|NP_567977.1| amino acid permease - like protein; protein id: At4g35180.1,
supported by cDNA: 36461. [Arabidopsis thaliana]
gi|28393033|gb|AAO41951.1| putative amino acid permease
[Arabidopsis thaliana]
Length = 456
Score = 76.3 bits (186), Expect = 2e-13
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = -2
Query: 491 CFMWLSIKKPRVKGVVWWFNLALGCLGMFLSVLLVAAAIKALADKGLHANFYKP 330
CFMW+SIKKP+ K +W FN+ +GCLG LSVLL+ A+ LA KGLHANF++P
Sbjct: 403 CFMWISIKKPQRKSPMWLFNVLVGCLGASLSVLLLVASAMRLAQKGLHANFFRP 456
>pir||T04965 amino acid transport protein homolog T12J5.50 - Arabidopsis
thaliana gi|4455344|emb|CAB36725.1| amino acid
permease-like protein [Arabidopsis thaliana]
gi|7270469|emb|CAB80235.1| amino acid permease-like
protein [Arabidopsis thaliana]
Length = 473
Score = 76.3 bits (186), Expect = 2e-13
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = -2
Query: 491 CFMWLSIKKPRVKGVVWWFNLALGCLGMFLSVLLVAAAIKALADKGLHANFYKP 330
CFMW+SIKKP+ K +W FN+ +GCLG LSVLL+ A+ LA KGLHANF++P
Sbjct: 420 CFMWISIKKPQRKSPMWLFNVLVGCLGASLSVLLLVASAMRLAQKGLHANFFRP 473
>dbj|BAA04838.1| ORF [Lilium longiflorum]
Length = 518
Score = 68.6 bits (166), Expect = 4e-11
Identities = 29/54 (53%), Positives = 38/54 (69%)
Frame = -2
Query: 491 CFMWLSIKKPRVKGVVWWFNLALGCLGMFLSVLLVAAAIKALADKGLHANFYKP 330
CFMW+ IKKP GV+WW N LGCLGM LSV+LV A + L + G++ +F+ P
Sbjct: 464 CFMWIVIKKPERFGVMWWLNWCLGCLGMGLSVVLVVAGVWRLVETGVNISFFDP 517
>dbj|BAA82706.1| amino acid transporter-like protein 1 [Arabidopsis thaliana]
Length = 519
Score = 47.0 bits (110), Expect = 1e-04
Identities = 21/54 (38%), Positives = 29/54 (52%)
Frame = -2
Query: 491 CFMWLSIKKPRVKGVVWWFNLALGCLGMFLSVLLVAAAIKALADKGLHANFYKP 330
CFMW+ IKKP W+F+ LG LG+ S+ I ++ GL F+KP
Sbjct: 464 CFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,045,851
Number of Sequences: 1393205
Number of extensions: 6954183
Number of successful extensions: 11845
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11845
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
