Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004491A_C01 KMC004491A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194104.1| putative protein; protein id: At4g23730.1, supp... 181 5e-45
ref|NP_200543.1| apospory-associated protein C; protein id: At5g... 171 5e-42
ref|NP_191720.1| putative protein; protein id: At3g61610.1 [Arab... 164 8e-40
gb|AAL87174.1|AF480497_2 putative apospory-associated protein C ... 162 2e-39
sp|Q40784|AAPC_PENCL POSSIBLE APOSPORY-ASSOCIATED PROTEIN C gi|5... 160 9e-39
>ref|NP_194104.1| putative protein; protein id: At4g23730.1, supported by cDNA:
21949. [Arabidopsis thaliana] gi|7486738|pir||T05605
hypothetical protein F9D16.200 - Arabidopsis thaliana
gi|4454042|emb|CAA23039.1| putative protein [Arabidopsis
thaliana] gi|7269222|emb|CAB81291.1| putative protein
[Arabidopsis thaliana] gi|21554299|gb|AAM63374.1|
apospory-associated protein C [Arabidopsis thaliana]
Length = 306
Score = 181 bits (459), Expect = 5e-45
Identities = 82/103 (79%), Positives = 96/103 (92%)
Frame = -3
Query: 530 RFTEQGDALTFESEVDRVYLDSCDVVAVLDHERKRTFMIRKEGLPDVVVWNPWEKKSKSV 351
RFTEQGDALTFESE+DRVYL+S DVVA+ DHERKRTF+I+KEGLPDVVVWNPWEKK++++
Sbjct: 204 RFTEQGDALTFESEIDRVYLNSKDVVAIFDHERKRTFLIKKEGLPDVVVWNPWEKKARAL 263
Query: 350 VDLGDEEYKHMLCVDGAAVGKPITLKPGEEWRGRLELSVVPST 222
DLGD+EY+HMLCVDGAA+ KPITLKPGEEW G+L LS+V ST
Sbjct: 264 TDLGDDEYRHMLCVDGAAIEKPITLKPGEEWTGKLHLSLVLST 306
>ref|NP_200543.1| apospory-associated protein C; protein id: At5g57330.1, supported
by cDNA: gi_20260439 [Arabidopsis thaliana]
gi|8777366|dbj|BAA96956.1| apospory-associated protein C
[Arabidopsis thaliana] gi|20260440|gb|AAM13118.1|
unknown protein [Arabidopsis thaliana]
gi|28059286|gb|AAO30044.1| unknown protein [Arabidopsis
thaliana]
Length = 312
Score = 171 bits (433), Expect = 5e-42
Identities = 75/103 (72%), Positives = 93/103 (89%)
Frame = -3
Query: 530 RFTEQGDALTFESEVDRVYLDSCDVVAVLDHERKRTFMIRKEGLPDVVVWNPWEKKSKSV 351
RFTEQGDA+TFESEVD++YL + +A+LDHE+KRTF+IRK+GL D VVWNPW+KKSK++
Sbjct: 197 RFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLADAVVWNPWDKKSKTI 256
Query: 350 VDLGDEEYKHMLCVDGAAVGKPITLKPGEEWRGRLELSVVPST 222
DLGDE+YKHMLCV+ AA+ +PITLKPGEEW+GRLELS VPS+
Sbjct: 257 SDLGDEDYKHMLCVEAAAIERPITLKPGEEWKGRLELSAVPSS 299
>ref|NP_191720.1| putative protein; protein id: At3g61610.1 [Arabidopsis thaliana]
gi|11281675|pir||T47953 hypothetical protein F2A19.210 -
Arabidopsis thaliana gi|6850852|emb|CAB71091.1| putative
protein [Arabidopsis thaliana]
Length = 317
Score = 164 bits (414), Expect = 8e-40
Identities = 78/101 (77%), Positives = 87/101 (85%)
Frame = -3
Query: 524 TEQGDALTFESEVDRVYLDSCDVVAVLDHERKRTFMIRKEGLPDVVVWNPWEKKSKSVVD 345
TEQGDA+TFESE+DR YL S VVAVLDHERKRT++I KEGLPD VVWNPWEKKSK++ D
Sbjct: 204 TEQGDAITFESEMDRTYLRSPKVVAVLDHERKRTYVIGKEGLPDTVVWNPWEKKSKTMAD 263
Query: 344 LGDEEYKHMLCVDGAAVGKPITLKPGEEWRGRLELSVVPST 222
GDEEYK MLCVDGAAV +PITLKPGEEW GRL L+ V S+
Sbjct: 264 FGDEEYKSMLCVDGAAVERPITLKPGEEWTGRLILTAVKSS 304
>gb|AAL87174.1|AF480497_2 putative apospory-associated protein C [Oryza sativa (japonica
cultivar-group)]
Length = 344
Score = 162 bits (411), Expect = 2e-39
Identities = 70/120 (58%), Positives = 96/120 (79%)
Frame = -3
Query: 530 RFTEQGDALTFESEVDRVYLDSCDVVAVLDHERKRTFMIRKEGLPDVVVWNPWEKKSKSV 351
R+TEQGDA+ FESE+DR+YL + +A++DHE+KRTF++RK GLPD VVWNPW+KK+K++
Sbjct: 219 RYTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWNPWDKKAKAM 278
Query: 350 VDLGDEEYKHMLCVDGAAVGKPITLKPGEEWRGRLELSVVPST*FQSDFYTNRINHHASI 171
D GD+EYK M+CV+ AA+ KPITLKPGEEW G+LELS VPS+ + +R+ +S+
Sbjct: 279 SDFGDDEYKRMVCVEAAAIEKPITLKPGEEWTGKLELSAVPSSYYSGQLDPDRVLQDSSV 338
>sp|Q40784|AAPC_PENCL POSSIBLE APOSPORY-ASSOCIATED PROTEIN C gi|549984|gb|AAA80575.1|
possible apospory-associated protein
Length = 329
Score = 160 bits (405), Expect = 9e-39
Identities = 71/103 (68%), Positives = 89/103 (85%)
Frame = -3
Query: 530 RFTEQGDALTFESEVDRVYLDSCDVVAVLDHERKRTFMIRKEGLPDVVVWNPWEKKSKSV 351
RFTEQGDA+ FESEVD+VYL + +A++DHE+K+TF++ KEGLPD VVWNPW+KK+K++
Sbjct: 213 RFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAM 272
Query: 350 VDLGDEEYKHMLCVDGAAVGKPITLKPGEEWRGRLELSVVPST 222
D GD EYK+MLCV+ AAV KPITLKPGEEWRGR+ LS VPS+
Sbjct: 273 QDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSS 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,470,381
Number of Sequences: 1393205
Number of extensions: 9589531
Number of successful extensions: 23085
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 22416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23047
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
