Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004489A_C01 KMC004489A_c01
(393 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_208495.1| similar to zinc finger protein; hypothetical pr... 34 0.39
ref|NP_060651.2| zinc finger protein; hypothetical protein FLJ10... 31 3.3
dbj|BAA91755.1| unnamed protein product [Homo sapiens] 31 3.3
dbj|BAB13455.1| KIAA1629 protein [Homo sapiens] 31 3.3
pir||T49316 profilaggrin related protein [imported] - Neurospora... 31 4.3
>ref|XP_208495.1| similar to zinc finger protein; hypothetical protein FLJ10697 [Homo
sapiens]
Length = 345
Score = 34.3 bits (77), Expect = 0.39
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -1
Query: 354 CRKL--QVHSPYSCAFFFFGLGFNCINCEAGNVEVNVLR-----SHCDLVFV*PLNPRQC 196
CR + Q H +C + +GF C++C +V L+ SHC++ + P+ P C
Sbjct: 52 CRSVHFQTHVTKNCLHYMRRVGFRCVHCNVVYSDVAALQSHIQGSHCEVFYKCPICPMAC 111
>ref|NP_060651.2| zinc finger protein; hypothetical protein FLJ10697 [Homo sapiens]
gi|14764499|gb|AAK72122.1| zinc finger protein [Homo
sapiens]
Length = 1301
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -1
Query: 354 CRKL--QVHSPYSCAFFFFGLGFNCINCEAGNVEVNVLR-----SHCDLVFV*PLNP 205
CR + Q H +C + +GF C++C +V L+ SHC++ + P+ P
Sbjct: 820 CRSVHFQTHVTKNCLHYTRRVGFRCVHCNVVYSDVAALKSHIQGSHCEVFYKCPICP 876
>dbj|BAA91755.1| unnamed protein product [Homo sapiens]
Length = 612
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -1
Query: 354 CRKL--QVHSPYSCAFFFFGLGFNCINCEAGNVEVNVLR-----SHCDLVFV*PLNP 205
CR + Q H +C + +GF C++C +V L+ SHC++ + P+ P
Sbjct: 131 CRSVHFQTHVTKNCLHYTRRVGFRCVHCNVVYSDVAALKSHIQGSHCEVFYKCPICP 187
>dbj|BAB13455.1| KIAA1629 protein [Homo sapiens]
Length = 1329
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -1
Query: 354 CRKL--QVHSPYSCAFFFFGLGFNCINCEAGNVEVNVLR-----SHCDLVFV*PLNP 205
CR + Q H +C + +GF C++C +V L+ SHC++ + P+ P
Sbjct: 848 CRSVHFQTHVTKNCLHYTRRVGFRCVHCNVVYSDVAALKSHIQGSHCEVFYKCPICP 904
>pir||T49316 profilaggrin related protein [imported] - Neurospora crassa
(fragment)
Length = 1386
Score = 30.8 bits (68), Expect = 4.3
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +3
Query: 51 TTNSFDHIRQQRNETPH*NYDNKFNPKDIG*DLKLGKFTIHASAKTKQNTGEGSKAKRKP 230
T++S DH +QQ+++ P + + DI + +H S Q+ G+G + P
Sbjct: 1168 TSHSHDHHQQQQHQLPPPTHLWSTSHWDILSSIIHAHRALHHSQSQSQSKGKGKQRAAAP 1227
Query: 231 GHSDF*AHSP 260
H + HSP
Sbjct: 1228 THHLYYPHSP 1237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,412,940
Number of Sequences: 1393205
Number of extensions: 5755693
Number of successful extensions: 10470
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10466
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
