Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004487A_C01 KMC004487A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05911 hypothetical protein - barley (fragment) gi|2274993|... 74 2e-12
pir||C86284 T15D22.11 protein - Arabidopsis thaliana gi|6899652|... 73 4e-12
gb|AAL91256.1| At1g15070/F9L1_1 [Arabidopsis thaliana] gi|241113... 73 4e-12
dbj|BAB84615.1| similar to Arabidopsis thaliana chromosome 1, At... 48 1e-04
pir||G96764 unknown protein F25P22.17 [imported] - Arabidopsis t... 47 4e-04
>pir||T05911 hypothetical protein - barley (fragment) gi|2274993|emb|CAA03956.1|
unnamed protein product [Hordeum vulgare subsp. vulgare]
Length = 108
Score = 74.3 bits (181), Expect = 2e-12
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -3
Query: 767 VFGEPEGPHYAHYDLVGGRLAVEQVYPCIIEFLNCHD 657
VFGEPEGPHYAHYDLVGGR AV +VYPCIIEFL+ HD
Sbjct: 68 VFGEPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHD 104
>pir||C86284 T15D22.11 protein - Arabidopsis thaliana
gi|6899652|gb|AAF31029.1|AC012189_11 Contains similarity
to unknown stress inducible protein product from Hordeum
vulgare gb|AJ000230. [Arabidopsis thaliana]
Length = 55
Score = 73.2 bits (178), Expect = 4e-12
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -3
Query: 767 VFGEPEGPHYAHYDLVGGRLAVEQVYPCIIEFLNCHD 657
+ GEP+GPHYAHYDLVGGRLAVEQVYPCI EFL+ HD
Sbjct: 17 LLGEPDGPHYAHYDLVGGRLAVEQVYPCITEFLSHHD 53
>gb|AAL91256.1| At1g15070/F9L1_1 [Arabidopsis thaliana] gi|24111379|gb|AAN46813.1|
At1g15070/F9L1_1 [Arabidopsis thaliana]
Length = 578
Score = 73.2 bits (178), Expect = 4e-12
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -3
Query: 767 VFGEPEGPHYAHYDLVGGRLAVEQVYPCIIEFLNCHD 657
+ GEP+GPHYAHYDLVGGRLAVEQVYPCI EFL+ HD
Sbjct: 540 LLGEPDGPHYAHYDLVGGRLAVEQVYPCITEFLSHHD 576
>dbj|BAB84615.1| similar to Arabidopsis thaliana chromosome 1, At1g15060 [Oryza
sativa (japonica cultivar-group)]
Length = 595
Score = 48.1 bits (113), Expect = 1e-04
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = -3
Query: 767 VFGEPEGPHYAHYDLVGGRLAVEQVYPCIIEFLNCHDK*YTRH 639
VFG+PEGPHYAHYDLVGGR E + + C + T H
Sbjct: 545 VFGKPEGPHYAHYDLVGGRKRQEAYTGTVALIIACRNARNTYH 587
>pir||G96764 unknown protein F25P22.17 [imported] - Arabidopsis thaliana
gi|12324207|gb|AAG52073.1|AC012679_11 unknown protein;
64603-66831 [Arabidopsis thaliana]
Length = 460
Score = 46.6 bits (109), Expect = 4e-04
Identities = 20/38 (52%), Positives = 23/38 (59%)
Frame = -3
Query: 767 VFGEPEGPHYAHYDLVGGRLAVEQVYPCIIEFLNCHDK 654
V G P GPHY H DL+ GR A +VYP I FL D+
Sbjct: 422 VVGSPGGPHYGHQDLISGRTARNEVYPLITRFLQQQDE 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,418,181
Number of Sequences: 1393205
Number of extensions: 14320016
Number of successful extensions: 36809
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 35611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36800
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
