Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004483A_C01 KMC004483A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66117.1| autophagocytosis protein-like [Arabidopsis thaliana] 148 5e-35
ref|NP_568934.1| autophagocytosis protein - like; protein id: At... 148 5e-35
dbj|BAB08995.1| autophagocytosis protein AUT1-like [Arabidopsis ... 141 6e-33
dbj|BAB92203.1| B1015E06.2 [Oryza sativa (japonica cultivar-group)] 134 6e-31
gb|AAO51200.1| hypothetical protein [Dictyostelium discoideum] 92 3e-18
>gb|AAM66117.1| autophagocytosis protein-like [Arabidopsis thaliana]
Length = 313
Score = 148 bits (373), Expect = 5e-35
Identities = 69/71 (97%), Positives = 71/71 (99%)
Frame = -3
Query: 561 IEDHPHLPGKHASIHPCQHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 382
IEDHPHLPGKHAS+HPC+HGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD
Sbjct: 242 IEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 301
Query: 381 YTMDFDLGSSS 349
YTMDFDLGSSS
Sbjct: 302 YTMDFDLGSSS 312
>ref|NP_568934.1| autophagocytosis protein - like; protein id: At5g61500.1, supported
by cDNA: 8184., supported by cDNA: gi_19912140
[Arabidopsis thaliana] gi|19912141|dbj|BAB88382.1|
autophagy 3 [Arabidopsis thaliana]
Length = 313
Score = 148 bits (373), Expect = 5e-35
Identities = 69/71 (97%), Positives = 71/71 (99%)
Frame = -3
Query: 561 IEDHPHLPGKHASIHPCQHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 382
IEDHPHLPGKHAS+HPC+HGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD
Sbjct: 242 IEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 301
Query: 381 YTMDFDLGSSS 349
YTMDFDLGSSS
Sbjct: 302 YTMDFDLGSSS 312
>dbj|BAB08995.1| autophagocytosis protein AUT1-like [Arabidopsis thaliana]
Length = 334
Score = 141 bits (355), Expect = 6e-33
Identities = 65/67 (97%), Positives = 67/67 (99%)
Frame = -3
Query: 561 IEDHPHLPGKHASIHPCQHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 382
IEDHPHLPGKHAS+HPC+HGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD
Sbjct: 242 IEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 301
Query: 381 YTMDFDL 361
YTMDFDL
Sbjct: 302 YTMDFDL 308
>dbj|BAB92203.1| B1015E06.2 [Oryza sativa (japonica cultivar-group)]
Length = 316
Score = 134 bits (338), Expect = 6e-31
Identities = 64/72 (88%), Positives = 69/72 (94%), Gaps = 1/72 (1%)
Frame = -3
Query: 561 IEDHPHLP-GKHASIHPCQHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEY 385
IEDHPHL GKHAS+HPC+H AVMKKIIDVLMS+GVEPEVDKYLF+FLKFMASVIPTIEY
Sbjct: 244 IEDHPHLSAGKHASVHPCKHAAVMKKIIDVLMSQGVEPEVDKYLFIFLKFMASVIPTIEY 303
Query: 384 DYTMDFDLGSSS 349
DYTMDFDLGS+S
Sbjct: 304 DYTMDFDLGSTS 315
>gb|AAO51200.1| hypothetical protein [Dictyostelium discoideum]
Length = 338
Score = 92.4 bits (228), Expect = 3e-18
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = -3
Query: 561 IEDHPHLPGKHASIHPCQHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYD 382
I+ HPHL A IHPC+H AVMKK++D G EP VD+YLFLFLKF++ VIPTIEYD
Sbjct: 272 IDSHPHLGISFAYIHPCRHAAVMKKLVDRQSENGKEPRVDQYLFLFLKFISVVIPTIEYD 331
Query: 381 YTMDFD 364
+T++FD
Sbjct: 332 FTLEFD 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,143,506
Number of Sequences: 1393205
Number of extensions: 9307355
Number of successful extensions: 17110
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17103
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
