Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004482A_C01 KMC004482A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86448 F5D14.14 protein - Arabidopsis thaliana gi|8920612|g... 54 7e-07
ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabido... 54 7e-07
ref|NP_680365.1| similar to F-box protein; protein id: At5g38565... 54 7e-07
ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arab... 53 2e-06
ref|NP_191051.1| putative protein; protein id: At3g54910.1 [Arab... 53 2e-06
>pir||F86448 F5D14.14 protein - Arabidopsis thaliana
gi|8920612|gb|AAF81334.1|AC007767_14 Contains similarity
to a hypothetical protein T25K17.150 gi|7487424 from
Arabidopsis thaliana BAC T25K17 gb|AL049171
Length = 536
Score = 54.3 bits (129), Expect = 7e-07
Identities = 28/77 (36%), Positives = 48/77 (61%), Gaps = 3/77 (3%)
Frame = -1
Query: 467 PHFVPECLTSCLTKCYLKRFEGTENDLQFAKYIMQNSTYLQSMKILSLSPD---PLEVLK 297
P VPECL + L ++EGTE + + A +I+++ + L+ + I S S D E+LK
Sbjct: 460 PSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKSTDINKKFEMLK 519
Query: 296 ELAMYPRKSASCELSFD 246
EL++ R+S +C+++FD
Sbjct: 520 ELSLLFRRSPTCQIAFD 536
>ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabidopsis thaliana]
Length = 422
Score = 54.3 bits (129), Expect = 7e-07
Identities = 28/77 (36%), Positives = 48/77 (61%), Gaps = 3/77 (3%)
Frame = -1
Query: 467 PHFVPECLTSCLTKCYLKRFEGTENDLQFAKYIMQNSTYLQSMKILSLSPD---PLEVLK 297
P VPECL + L ++EGTE + + A +I+++ + L+ + I S S D E+LK
Sbjct: 346 PSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKSTDINKKFEMLK 405
Query: 296 ELAMYPRKSASCELSFD 246
EL++ R+S +C+++FD
Sbjct: 406 ELSLLFRRSPTCQIAFD 422
>ref|NP_680365.1| similar to F-box protein; protein id: At5g38565.1 [Arabidopsis
thaliana]
Length = 415
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/77 (38%), Positives = 45/77 (57%), Gaps = 1/77 (1%)
Frame = -1
Query: 482 DVLHYPHFVPECLTSCLTKCYLKRFEGTENDLQFAKYIMQNSTYLQSMKILSLSPDPL-E 306
D + P VPECL L L + G + DL F YI++N+ +L++ IL+ P+ L
Sbjct: 262 DCWNQPISVPECLLESLQIFNLSHYFGKQQDLDFVVYILKNACHLKTATILADEPEHLVP 321
Query: 305 VLKELAMYPRKSASCEL 255
LKEL + PR S++C+L
Sbjct: 322 NLKELTLSPRASSTCQL 338
>ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arabidopsis thaliana]
gi|10176826|dbj|BAB10148.1|
gene_id:MBB18.13~pir||T06729~similar to unknown protein
[Arabidopsis thaliana]
Length = 168
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = -1
Query: 467 PHFVPECLTSCLTKCYLKRFEGTENDLQFAKYIMQNSTYLQSMKILSLSPD----PLEVL 300
P+FVPECL S L R+ G + D A YI++N+ +L++ IL+ + + L+++
Sbjct: 87 PNFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKNACHLKTATILADTDEHDVPNLQMI 146
Query: 299 KELAMYPRKSASCELSF 249
KELA+ R S C+L F
Sbjct: 147 KELALSLRTSVICQLVF 163
>ref|NP_191051.1| putative protein; protein id: At3g54910.1 [Arabidopsis thaliana]
gi|7486334|pir||T06729 hypothetical protein F28P10.110 -
Arabidopsis thaliana gi|4678302|emb|CAB41093.1| putative
protein [Arabidopsis thaliana]
Length = 320
Score = 52.8 bits (125), Expect = 2e-06
Identities = 29/86 (33%), Positives = 47/86 (53%), Gaps = 4/86 (4%)
Frame = -1
Query: 491 KDDDVL--HYPHFVPECLTSCLTKCYLKRFEGTENDLQFAKYIMQNSTYLQSMKILS--L 324
++ D+L H P VPEC+ L L + GT + A Y ++N+ +L++ I S
Sbjct: 235 ENHDILYWHQPSTVPECMLLSLQTLNLSAYRGTPEERDLAVYFLKNAVHLKTTTIKSCVF 294
Query: 323 SPDPLEVLKELAMYPRKSASCELSFD 246
+ ++LKELA+ R S +C+L FD
Sbjct: 295 DDERFDMLKELALSSRASTTCQLVFD 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,620,715
Number of Sequences: 1393205
Number of extensions: 7908494
Number of successful extensions: 15962
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 15655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15946
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
