Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004481A_C01 KMC004481A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_219146.1| similar to T4 olfactory receptor [Mus musculus]... 32 3.8
ref|NP_230030.1| conserved hypothetical protein [Vibrio cholerae... 32 4.9
ref|NP_395144.1| hypothetical protein YPCD1.07 [Yersinia pestis ... 32 4.9
>ref|XP_219146.1| similar to T4 olfactory receptor [Mus musculus] [Rattus norvegicus]
Length = 316
Score = 32.0 bits (71), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 311 LYCPLICLRRVIISIILR*MKQQSNDIRRKVLLPALLSMKSDKIWYGGCNMLYV 472
L PL + I I+ ++ SN+ R+K L+ + +WYGG +++YV
Sbjct: 207 LILPLAVILASYIRILFTVLRMPSNEGRKKALVTCSSHLIVVGMWYGGSSLMYV 260
>ref|NP_230030.1| conserved hypothetical protein [Vibrio cholerae]
gi|11354520|pir||D82330 conserved hypothetical protein
VC0376 [imported] - Vibrio cholerae (strain N16961
serogroup O1) gi|9654794|gb|AAF93549.1| conserved
hypothetical protein [Vibrio cholerae]
Length = 392
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +2
Query: 212 GETLSISEKNKSTAVTSGLQFEEISFQRHIQHGLYCPLICLRRVI 346
GE+L+++ + S A GL+ E +S R+ Q GL C L+ L V+
Sbjct: 348 GESLTMANHSASHAWWQGLETEPMSGARYWQMGLACSLLLLLMVV 392
>ref|NP_395144.1| hypothetical protein YPCD1.07 [Yersinia pestis CO92]
gi|11354284|pir||T42909 hypothetical protein Y0076 -
Yersinia pestis plasmid pCD1 gi|3822097|gb|AAC69817.1|
unknown [Yersinia pestis] gi|5832430|emb|CAB54884.1|
hypothetical protein YPCD1.07 [Yersinia pestis]
Length = 98
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 477 EETYNILHPPY--HILSLFMDKRAGSNTFRRISLLCCFIYLSMILMMTLLK 331
++ I+ PP+ +I ++F+ +G+N F SLL YLS +L++ L K
Sbjct: 2 DKNKGIVFPPFSINIANIFVPDLSGANRFLACSLLEFLTYLSSVLLLMLWK 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,674,386
Number of Sequences: 1393205
Number of extensions: 7181555
Number of successful extensions: 16377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16377
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
