Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004479A_C01 KMC004479A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568660.1| RRM-containing protein; protein id: At5g46250.1... 110 8e-24
dbj|BAB11080.1| contains similarity to RNA-binding protein~gene_... 110 8e-24
dbj|BAB90138.1| RNA-binding protein-like [Oryza sativa (japonica... 86 4e-16
ref|NP_566004.1| VirF-interacting protein FIP1; protein id: At2g... 67 1e-10
pir||T00677 hypothetical protein At2g43970 [imported] - Arabidop... 67 1e-10
>ref|NP_568660.1| RRM-containing protein; protein id: At5g46250.1, supported by cDNA:
gi_15215747 [Arabidopsis thaliana]
gi|15215748|gb|AAK91419.1| AT5g46250/MPL12_3
[Arabidopsis thaliana] gi|23308375|gb|AAN18157.1|
At5g46250/MPL12_3 [Arabidopsis thaliana]
Length = 422
Score = 110 bits (276), Expect = 8e-24
Identities = 67/152 (44%), Positives = 92/152 (60%), Gaps = 23/152 (15%)
Frame = +3
Query: 144 SPPVGD--PVTGPDPATA--------LDDVDE-------PEIHVLISDDDHESPDHDHDQ 272
SP + D P+ P+ ATA L +VD ++ V +S+ + SP D
Sbjct: 14 SPSISDAVPLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDFD 73
Query: 273 EVDHHEEDHDRDHA---AETG---LSLDDLKLKIIRQVEYYFSDENLPNDKYLLGFLKKN 434
+ ED D+DH ET + +D+L KIIRQVEYYFSDENLP DK+LL +K+N
Sbjct: 74 HERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRN 133
Query: 435 REGFVPTSVIASFRKMNRLTRDHSVMVAALKE 530
++GFVP S IA+F KM +LTRDH+++V+ALKE
Sbjct: 134 KKGFVPISTIATFHKMKKLTRDHALIVSALKE 165
>dbj|BAB11080.1| contains similarity to RNA-binding protein~gene_id:MPL12.3
[Arabidopsis thaliana]
Length = 411
Score = 110 bits (276), Expect = 8e-24
Identities = 67/152 (44%), Positives = 92/152 (60%), Gaps = 23/152 (15%)
Frame = +3
Query: 144 SPPVGD--PVTGPDPATA--------LDDVDE-------PEIHVLISDDDHESPDHDHDQ 272
SP + D P+ P+ ATA L +VD ++ V +S+ + SP D
Sbjct: 3 SPSISDAVPLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDFD 62
Query: 273 EVDHHEEDHDRDHA---AETG---LSLDDLKLKIIRQVEYYFSDENLPNDKYLLGFLKKN 434
+ ED D+DH ET + +D+L KIIRQVEYYFSDENLP DK+LL +K+N
Sbjct: 63 HERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRN 122
Query: 435 REGFVPTSVIASFRKMNRLTRDHSVMVAALKE 530
++GFVP S IA+F KM +LTRDH+++V+ALKE
Sbjct: 123 KKGFVPISTIATFHKMKKLTRDHALIVSALKE 154
>dbj|BAB90138.1| RNA-binding protein-like [Oryza sativa (japonica cultivar-group)]
Length = 389
Score = 85.5 bits (210), Expect = 4e-16
Identities = 38/64 (59%), Positives = 55/64 (85%)
Frame = +3
Query: 336 DDLKLKIIRQVEYYFSDENLPNDKYLLGFLKKNREGFVPTSVIASFRKMNRLTRDHSVMV 515
D+L +I++QVEYYFSDENLP D++L+ F+KKN++GFVP VIASFR+M +L++D S++
Sbjct: 85 DELCDRIVKQVEYYFSDENLPTDEFLIKFVKKNKQGFVPIGVIASFRRMKKLSQDLSIIE 144
Query: 516 AALK 527
AAL+
Sbjct: 145 AALR 148
>ref|NP_566004.1| VirF-interacting protein FIP1; protein id: At2g43970.1, supported
by cDNA: gi_12744918, supported by cDNA: gi_14030638,
supported by cDNA: gi_14194142 [Arabidopsis thaliana]
gi|12744919|gb|AAK06847.1| VirF-interacting protein FIP1
[Arabidopsis thaliana]
gi|14030639|gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10
[Arabidopsis thaliana]
gi|14194143|gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10
[Arabidopsis thaliana] gi|15810399|gb|AAL07087.1|
unknown protein [Arabidopsis thaliana]
gi|20197078|gb|AAC23405.2| expressed protein
[Arabidopsis thaliana] gi|22136548|gb|AAM91060.1|
At2g43970/F6E13.10 [Arabidopsis thaliana]
Length = 545
Score = 67.0 bits (162), Expect = 1e-10
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = +3
Query: 279 DHHEEDHDRDHAAETGLSL---------DDLKLKIIRQVEYYFSDENLPNDKYLLGFLKK 431
DH + + D ETG S+ +D KI+ QVEYYFSD NL +L+ F+ K
Sbjct: 163 DHSKRESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICK 222
Query: 432 NREGFVPTSVIASFRKMNRLTRDHSVMVAALK 527
+ EG+VP V+ASF+K+ + ++S + A L+
Sbjct: 223 DPEGYVPIHVVASFKKIKAVINNNSQLAAVLQ 254
>pir||T00677 hypothetical protein At2g43970 [imported] - Arabidopsis thaliana
Length = 529
Score = 67.0 bits (162), Expect = 1e-10
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = +3
Query: 279 DHHEEDHDRDHAAETGLSL---------DDLKLKIIRQVEYYFSDENLPNDKYLLGFLKK 431
DH + + D ETG S+ +D KI+ QVEYYFSD NL +L+ F+ K
Sbjct: 163 DHSKRESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICK 222
Query: 432 NREGFVPTSVIASFRKMNRLTRDHSVMVAALK 527
+ EG+VP V+ASF+K+ + ++S + A L+
Sbjct: 223 DPEGYVPIHVVASFKKIKAVINNNSQLAAVLQ 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,122,385
Number of Sequences: 1393205
Number of extensions: 12966614
Number of successful extensions: 88273
Number of sequences better than 10.0: 653
Number of HSP's better than 10.0 without gapping: 61772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81391
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
