Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004476A_C01 KMC004476A_c01
(426 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192034.1| WRKY family transcription factor; protein id: A... 34 0.48
emb|CAB45688.1| Proline rich synapse associated protein 2 [Rattu... 33 0.82
sp|Q9JLU4|SHK3_RAT SH3 and multiple ankyrin repeat domains 3 (Sh... 33 0.82
ref|NP_067708.1| SH3/ankyrin domain gene 3; proline rich synapse... 33 0.82
ref|XP_139523.1| similar to Proline rich synapse associated prot... 33 0.82
>ref|NP_192034.1| WRKY family transcription factor; protein id: At4g01250.1,
supported by cDNA: gi_15028172, supported by cDNA:
gi_17064155, supported by cDNA: gi_19310808 [Arabidopsis
thaliana] gi|7485236|pir||T01719 hypothetical protein
A_IG002N01.6 - Arabidopsis thaliana
gi|2191129|gb|AAB61016.1| similar to SPF1 DNA-binding
protein [Arabidopsis thaliana]
gi|7267622|emb|CAB80934.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|15028173|gb|AAK76583.1|
putative DNA-binding protein [Arabidopsis thaliana]
gi|17064156|gb|AAL35285.1|AF442392_1 WRKY transcription
factor 22 [Arabidopsis thaliana]
gi|19310809|gb|AAL85135.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 298
Score = 33.9 bits (76), Expect = 0.48
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = -3
Query: 424 EGEDEFFGLSDMVLTDDFFESLDDELSQITGSSDPFSAIAIP-----TWV---AANGAGG 269
+GE++ LSD V++DDFF+ L++ + D FS + P +WV AA GG
Sbjct: 243 DGEEDLLSLSDTVVSDDFFDGLEE-----FAAGDSFSGNSAPASFDLSWVVNSAATTTGG 297
>emb|CAB45688.1| Proline rich synapse associated protein 2 [Rattus norvegicus]
Length = 1806
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 PTTQLPPAPLAATQVGIAIAE-KGSEEPVI*LSSSSKLSKKSSVSTIS 395
P+++LPPAP +A G+ A+ + S +P L ++S +S SS+ST+S
Sbjct: 1417 PSSELPPAPESAADSGVEEADTRSSSDPH--LETTSTISTVSSMSTLS 1462
>sp|Q9JLU4|SHK3_RAT SH3 and multiple ankyrin repeat domains 3 (Shank3) (Proline rich
synapse associated protein 2) (ProSAP2) (SPANK-2)
Length = 1815
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 PTTQLPPAPLAATQVGIAIAE-KGSEEPVI*LSSSSKLSKKSSVSTIS 395
P+++LPPAP +A G+ A+ + S +P L ++S +S SS+ST+S
Sbjct: 1417 PSSELPPAPESAADSGVEEADTRSSSDPH--LETTSTISTVSSMSTLS 1462
>ref|NP_067708.1| SH3/ankyrin domain gene 3; proline rich synapse associated protein 2;
Shank postsynaptic density protein 3a [Rattus norvegicus]
gi|7381056|gb|AAF61375.1|AF133301_1 Shank postsynaptic
density protein 3a [Rattus norvegicus]
Length = 1740
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 PTTQLPPAPLAATQVGIAIAE-KGSEEPVI*LSSSSKLSKKSSVSTIS 395
P+++LPPAP +A G+ A+ + S +P L ++S +S SS+ST+S
Sbjct: 1342 PSSELPPAPESAADSGVEEADTRSSSDPH--LETTSTISTVSSMSTLS 1387
>ref|XP_139523.1| similar to Proline rich synapse associated protein 2 [Rattus
norvegicus] [Mus musculus]
Length = 648
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 PTTQLPPAPLAATQVGIAIAE-KGSEEPVI*LSSSSKLSKKSSVSTIS 395
P+++LPPAP +A G+ A+ + S +P L ++S +S SS+ST+S
Sbjct: 337 PSSELPPAPESAADSGVEEADTRSSSDPH--LETTSTISTVSSMSTLS 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,992,028
Number of Sequences: 1393205
Number of extensions: 5762407
Number of successful extensions: 17759
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16950
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
