Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004475A_C01 KMC004475A_c01
(1044 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91571.1| unknown protein [Arabidopsis thaliana] gi|2319827... 251 1e-65
dbj|BAB02356.1| gb|AAB61516.1~gene_id:MIL23.18~similar to unknow... 224 1e-57
ref|NP_188798.1| unknown protein; protein id: At3g21610.1 [Arabi... 223 4e-57
ref|NP_176927.1| F12A21.27; protein id: At1g67600.1, supported b... 201 2e-50
ref|NP_564215.1| expressed protein; protein id: At1g24350.1, sup... 200 3e-50
>gb|AAM91571.1| unknown protein [Arabidopsis thaliana] gi|23198278|gb|AAN15666.1|
unknown protein [Arabidopsis thaliana]
Length = 174
Score = 251 bits (641), Expect = 1e-65
Identities = 117/149 (78%), Positives = 135/149 (90%)
Frame = -3
Query: 925 SSSTLPFNAPLLSAFLAFAIAQILKIFTTWYKEKRWDSKRMLDSGGMPSSHSATVSALAL 746
S + P N P+ SAFLAFA+AQ LK+FT WYKEKRWDSKRM+ SGGMPSSHSATV+ALA+
Sbjct: 26 SHNLFPHNLPIFSAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAV 85
Query: 745 AIGLQEGAGSPAFAIAVVLSCIVMYDASGVRLHAGRQAELLNQIVCELPPEHPLSTVRPL 566
AIG +EGAG+PAFAIAVVL+C+VMYDASGVRLHAGRQAELLNQIVCE PPEHPLSTVRPL
Sbjct: 86 AIGFEEGAGAPAFAIAVVLACVVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTVRPL 145
Query: 565 RDSLGHTPLQVVAGGLLGCIIAFFMRSSN 479
R+ LGHTP+QV AGG+LGC++A+ MRSS+
Sbjct: 146 RELLGHTPIQVAAGGILGCVVAYLMRSSS 174
>dbj|BAB02356.1| gb|AAB61516.1~gene_id:MIL23.18~similar to unknown protein
[Arabidopsis thaliana]
Length = 169
Score = 224 bits (572), Expect = 1e-57
Identities = 106/131 (80%), Positives = 119/131 (89%)
Frame = -3
Query: 925 SSSTLPFNAPLLSAFLAFAIAQILKIFTTWYKEKRWDSKRMLDSGGMPSSHSATVSALAL 746
S + P N P+ SAFLAFA+AQ LK+FT WYKEKRWDSKRM+ SGGMPSSHSATV+ALA+
Sbjct: 22 SHNLFPHNLPIFSAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAV 81
Query: 745 AIGLQEGAGSPAFAIAVVLSCIVMYDASGVRLHAGRQAELLNQIVCELPPEHPLSTVRPL 566
AIG +EGAG+PAFAIAVVL+C+VMYDASGVRLHAGRQAELLNQIVCE PPEHPLSTVRPL
Sbjct: 82 AIGFEEGAGAPAFAIAVVLACVVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTVRPL 141
Query: 565 RDSLGHTPLQV 533
R+ LGHTP+QV
Sbjct: 142 RELLGHTPIQV 152
>ref|NP_188798.1| unknown protein; protein id: At3g21610.1 [Arabidopsis thaliana]
Length = 194
Score = 223 bits (568), Expect = 4e-57
Identities = 105/130 (80%), Positives = 118/130 (90%)
Frame = -3
Query: 925 SSSTLPFNAPLLSAFLAFAIAQILKIFTTWYKEKRWDSKRMLDSGGMPSSHSATVSALAL 746
S + P N P+ SAFLAFA+AQ LK+FT WYKEKRWDSKRM+ SGGMPSSHSATV+ALA+
Sbjct: 26 SHNLFPHNLPIFSAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAV 85
Query: 745 AIGLQEGAGSPAFAIAVVLSCIVMYDASGVRLHAGRQAELLNQIVCELPPEHPLSTVRPL 566
AIG +EGAG+PAFAIAVVL+C+VMYDASGVRLHAGRQAELLNQIVCE PPEHPLSTVRPL
Sbjct: 86 AIGFEEGAGAPAFAIAVVLACVVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTVRPL 145
Query: 565 RDSLGHTPLQ 536
R+ LGHTP+Q
Sbjct: 146 RELLGHTPIQ 155
>ref|NP_176927.1| F12A21.27; protein id: At1g67600.1, supported by cDNA: 28118.
[Arabidopsis thaliana] gi|25303765|pir||E96699 protein
F12A21.27 [imported] - Arabidopsis thaliana
gi|11072018|gb|AAG28897.1|AC008113_13 F12A21.27
[Arabidopsis thaliana] gi|21555489|gb|AAM63870.1|
unknown [Arabidopsis thaliana]
Length = 163
Score = 201 bits (511), Expect = 2e-50
Identities = 102/145 (70%), Positives = 119/145 (81%), Gaps = 2/145 (1%)
Frame = -3
Query: 940 SAPSSSSSTLPF--NAPLLSAFLAFAIAQILKIFTTWYKEKRWDSKRMLDSGGMPSSHSA 767
S SSSS + N PL+SA LAF IAQ +K FT+WYKE+RWD KR++ SGGMPSSHSA
Sbjct: 4 SVASSSSHYISIFTNYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMPSSHSA 63
Query: 766 TVSALALAIGLQEGAGSPAFAIAVVLSCIVMYDASGVRLHAGRQAELLNQIVCELPPEHP 587
TV+ALALA+GLQEG G FAIA+VL+ IVMYDA+GVRLHAGRQAE+LNQIV ELP EHP
Sbjct: 64 TVTALALAVGLQEGFGGSHFAIALVLTTIVMYDATGVRLHAGRQAEVLNQIVYELPAEHP 123
Query: 586 LSTVRPLRDSLGHTPLQVVAGGLLG 512
L+ RPLR+ LGHTP QV+AGG+LG
Sbjct: 124 LAETRPLRELLGHTPPQVIAGGMLG 148
>ref|NP_564215.1| expressed protein; protein id: At1g24350.1, supported by cDNA:
27548. [Arabidopsis thaliana]
Length = 168
Score = 200 bits (509), Expect = 3e-50
Identities = 99/156 (63%), Positives = 125/156 (79%)
Frame = -3
Query: 967 MADVTASTRSAPSSSSSTLPFNAPLLSAFLAFAIAQILKIFTTWYKEKRWDSKRMLDSGG 788
M D TA+ S+ S+ ++ N PL+SA +F IAQ +K+FT+WY+E+RWD K+++ SGG
Sbjct: 1 MEDSTATATSSSSTHYFSIFTNYPLISAVTSFTIAQFIKLFTSWYRERRWDLKQLIGSGG 60
Query: 787 MPSSHSATVSALALAIGLQEGAGSPAFAIAVVLSCIVMYDASGVRLHAGRQAELLNQIVC 608
MPSSHSATV+ALA+AIGLQEG G FAIA++L+ +VMYDA+GVRLHAGRQAE+LNQIV
Sbjct: 61 MPSSHSATVTALAVAIGLQEGFGGSHFAIALILASVVMYDATGVRLHAGRQAEVLNQIVY 120
Query: 607 ELPPEHPLSTVRPLRDSLGHTPLQVVAGGLLGCIIA 500
ELP EHPL+ RPLR+ LGHTP QVVAGG+LG A
Sbjct: 121 ELPAEHPLAESRPLRELLGHTPPQVVAGGMLGSATA 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 909,672,110
Number of Sequences: 1393205
Number of extensions: 19997165
Number of successful extensions: 57707
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 54123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57522
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61532797421
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
