Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004474A_C03 KMC004474A_c03
(798 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA32099.2| unknown [Tetrahymena pyriformis] 33 3.7
ref|NP_049602.1| orf443 [Tetrahymena pyriformis] gi|5306163|gb|A... 33 3.7
gb|AAL99362.1| high-affinity nitrate transporter [Daucus carota] 33 6.3
>gb|AAA32099.2| unknown [Tetrahymena pyriformis]
Length = 443
Score = 33.5 bits (75), Expect = 3.7
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Frame = +1
Query: 10 TNYRNMLNRVIVH*FHNLLQSRNLLNNS---------YKFKEHRNILNKVIMDH*FHNLL 162
+NY N +N F LL SRN ++N KF ++ + N ++ N
Sbjct: 145 SNYSNFINLDFKDLFATLLLSRNSISNDTIKISTYNLLKFNDYISYSNSTSLE---KNFN 201
Query: 163 QSRNVLKNSYN-YKFK*HGI----SFFSATNDLKTSVGY 264
+++ VLKN YN KFK H + S+F+ N L+ S Y
Sbjct: 202 KNQLVLKNDYNIIKFK-HNLINYKSYFNFKNILEFSNNY 239
>ref|NP_049602.1| orf443 [Tetrahymena pyriformis]
gi|5306163|gb|AAD41947.1|AF160864_35 orf443 [Tetrahymena
pyriformis]
Length = 443
Score = 33.5 bits (75), Expect = 3.7
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Frame = +1
Query: 10 TNYRNMLNRVIVH*FHNLLQSRNLLNNS---------YKFKEHRNILNKVIMDH*FHNLL 162
+NY N +N F LL SRN ++N KF ++ + N ++ N
Sbjct: 145 SNYSNFINLDFKDLFATLLLSRNSISNDTIKISTYNLLKFNDYISYSNSTSLE---KNFN 201
Query: 163 QSRNVLKNSYN-YKFK*HGI----SFFSATNDLKTSVGY 264
+++ VLKN YN KFK H + S+F+ N L+ S Y
Sbjct: 202 KNQLVLKNDYNIIKFK-HNLINYKSYFNFKNILEFSNNY 239
>gb|AAL99362.1| high-affinity nitrate transporter [Daucus carota]
Length = 535
Score = 32.7 bits (73), Expect = 6.3
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 593 ASMKDSS---HESMITEHLLKRIEAKSFSPPESVLCWLI*ASWPT*FIFTF 736
AS D+S H + +EH K + KSFSPP + L S+PT F+ TF
Sbjct: 27 ASRIDTSAEFHVPVDSEHKAKVFKFKSFSPPHGLQFQLTWISFPTCFVSTF 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 665,870,741
Number of Sequences: 1393205
Number of extensions: 14005153
Number of successful extensions: 31035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31019
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40336047648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
