Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004473A_C01 KMC004473A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10647.1| contains similarity to RNA-binding protein~gene_... 60 2e-08
gb|AAM62628.1| ras-GTPase-activating protein SH3-domain binding ... 60 2e-08
ref|NP_200906.1| NTF2-containing RNA-binding protein, putative; ... 60 2e-08
ref|NP_563932.1| NTF2-containing RNA-binding protein, putative; ... 56 4e-07
gb|AAH44442.1| Similar to heterogeneous nuclear ribonucleoprotei... 55 7e-07
>dbj|BAB10647.1| contains similarity to RNA-binding protein~gene_id:MSL3.12
[Arabidopsis thaliana] gi|17063173|gb|AAL32982.1|
AT5g60980/MSL3_100 [Arabidopsis thaliana]
gi|27764908|gb|AAO23575.1| At5g60980/MSL3_100
[Arabidopsis thaliana]
Length = 460
Score = 60.1 bits (144), Expect = 2e-08
Identities = 42/98 (42%), Positives = 51/98 (51%), Gaps = 8/98 (8%)
Frame = -1
Query: 598 IEERRANN--------DRARYPSGRGGYRNDRNDSFRGRGNFGGGNFGGGRGGGYNGRND 443
+EE++ N+ R RY SGRG + RN+SF+G G GGG G GRGGG
Sbjct: 365 VEEKKTNSRGGGNNGGSRGRYFSGRGSF---RNESFKG-GRGGGGRGGYGRGGG------ 414
Query: 442 FERRNEFSGRPRGGNNMGRNNGETAPRSYQNGQTGQNG 329
EFSGRP+ N RN GE R QNG G+ G
Sbjct: 415 -----EFSGRPKSSN--PRNGGEGYQRVPQNGGGGRGG 445
>gb|AAM62628.1| ras-GTPase-activating protein SH3-domain binding protein-like
[Arabidopsis thaliana]
Length = 459
Score = 60.1 bits (144), Expect = 2e-08
Identities = 42/98 (42%), Positives = 51/98 (51%), Gaps = 8/98 (8%)
Frame = -1
Query: 598 IEERRANN--------DRARYPSGRGGYRNDRNDSFRGRGNFGGGNFGGGRGGGYNGRND 443
+EE++ N+ R RY SGRG + RN+SF+G G GGG G GRGGG
Sbjct: 364 VEEKKTNSRGGGNNGGSRGRYFSGRGSF---RNESFKG-GRGGGGRGGYGRGGG------ 413
Query: 442 FERRNEFSGRPRGGNNMGRNNGETAPRSYQNGQTGQNG 329
EFSGRP+ N RN GE R QNG G+ G
Sbjct: 414 -----EFSGRPKSSN--PRNGGEGYQRVPQNGGGGRGG 444
>ref|NP_200906.1| NTF2-containing RNA-binding protein, putative; protein id:
At5g60980.1, supported by cDNA: 150047. [Arabidopsis
thaliana]
Length = 459
Score = 60.1 bits (144), Expect = 2e-08
Identities = 42/98 (42%), Positives = 51/98 (51%), Gaps = 8/98 (8%)
Frame = -1
Query: 598 IEERRANN--------DRARYPSGRGGYRNDRNDSFRGRGNFGGGNFGGGRGGGYNGRND 443
+EE++ N+ R RY SGRG + RN+SF+G G GGG G GRGGG
Sbjct: 364 VEEKKTNSRGGGNNGGSRGRYFSGRGSF---RNESFKG-GRGGGGRGGYGRGGG------ 413
Query: 442 FERRNEFSGRPRGGNNMGRNNGETAPRSYQNGQTGQNG 329
EFSGRP+ N RN GE R QNG G+ G
Sbjct: 414 -----EFSGRPKSSN--PRNGGEGYQRVPQNGGGGRGG 444
>ref|NP_563932.1| NTF2-containing RNA-binding protein, putative; protein id:
At1g13730.1, supported by cDNA: gi_16648784 [Arabidopsis
thaliana] gi|25518618|pir||F86270 hypothetical protein
F21F23.16 - Arabidopsis thaliana
gi|8920577|gb|AAF81299.1|AC027656_16 Strong similarity
to a hypothetical protein At2g03640 gi|4406775 from
Arabidopsis thaliana BAC T18C20 gb|AC006836. It
contains a nuclear transport factor 2 (NTF2) domain
PF|02136 gi|16648785|gb|AAL25583.1| At1g13730/F21F23_12
[Arabidopsis thaliana] gi|22655180|gb|AAM98180.1|
expressed protein [Arabidopsis thaliana]
Length = 428
Score = 55.8 bits (133), Expect = 4e-07
Identities = 35/78 (44%), Positives = 39/78 (49%), Gaps = 4/78 (5%)
Frame = -1
Query: 598 IEERRANNDRARYPSGRGGYRND---RNDSFRGRGNFGGGNFGGGRGGGYNGRNDFERRN 428
IEE+R NND R GGYRND RND +R RGN G GG GRN ERR
Sbjct: 352 IEEKRGNNDNGRPAMRNGGYRNDNGYRNDGYRPRGN-------GSNGGRGYGRNGSERRG 404
Query: 427 EF-SGRPRGGNNMGRNNG 377
E +G G+ NG
Sbjct: 405 ESRNGEAHNGDGKVHQNG 422
>gb|AAH44442.1| Similar to heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
Length = 422
Score = 55.1 bits (131), Expect = 7e-07
Identities = 38/85 (44%), Positives = 40/85 (46%), Gaps = 9/85 (10%)
Frame = -1
Query: 553 GRGGYRNDRNDSFRGRGNFGGGNFGGGRGGGYN-----GRNDFERRNEFSGR--PRGGN- 398
G GGY N N G GNFGGGNFGGG GGG N NDF N P GN
Sbjct: 330 GGGGYNNYNN----GNGNFGGGNFGGGGGGGGNSGGGGNYNDFGNYNSQQSNYGPMKGNF 385
Query: 397 -NMGRNNGETAPRSYQNGQTGQNGG 326
GRN+G Y G +G GG
Sbjct: 386 GGGGRNSGPYG-GGYGGGSSGSGGG 409
Score = 50.4 bits (119), Expect = 2e-05
Identities = 33/83 (39%), Positives = 37/83 (43%), Gaps = 9/83 (10%)
Frame = -1
Query: 547 GGYRND--------RNDSFRGRGNFGGGNFGGGRGGGYNGRND-FERRNEFSGRPRGGNN 395
GGY ND D + GRG G GGG GGGY G D + N F G GG
Sbjct: 230 GGYNNDFGGGGGGGNRDGYFGRGGRGNNFGGGGGGGGYGGGGDCYNNNNGFGG---GGYG 286
Query: 394 MGRNNGETAPRSYQNGQTGQNGG 326
G NG +P +Y G G GG
Sbjct: 287 GGGGNGGGSPGNY-GGNRGYGGG 308
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -1
Query: 553 GRGGYRNDRNDSFRGRGNFGGGNFGGGRGGGYNGRNDFERRNEFSGRPRGGNNMGRNNGE 374
G GGY D + FGGG +GGG G G ++ + G GG+ G G
Sbjct: 263 GGGGYGGG-GDCYNNNNGFGGGGYGGGGGNGGGSPGNYGGNRGYGGGGGGGHGYGNQGG- 320
Query: 373 TAPRSYQNGQTGQNGG 326
Y G +G GG
Sbjct: 321 ----GYGGGNSGGGGG 332
Score = 38.1 bits (87), Expect = 0.086
Identities = 26/77 (33%), Positives = 29/77 (36%), Gaps = 1/77 (1%)
Frame = -1
Query: 553 GRGGYRNDRNDSFRGRGNFGGGNFG-GGRGGGYNGRNDFERRNEFSGRPRGGNNMGRNNG 377
G GG RG G GGG G G +GGGY G N GG G NN
Sbjct: 290 GNGGGSPGNYGGNRGYGGGGGGGHGYGNQGGGYGGGNS------------GGGGGGYNNY 337
Query: 376 ETAPRSYQNGQTGQNGG 326
++ G G GG
Sbjct: 338 NNGNGNFGGGNFGGGGG 354
Score = 36.6 bits (83), Expect = 0.25
Identities = 22/63 (34%), Positives = 27/63 (41%), Gaps = 6/63 (9%)
Frame = -1
Query: 511 GRGNFGGGNFGGGRGGGYNGRNDFERRN------EFSGRPRGGNNMGRNNGETAPRSYQN 350
G GN GGG GG GGG G N++ N F G GG N G +Y +
Sbjct: 314 GYGNQGGGYGGGNSGGGGGGYNNYNNGNGNFGGGNFGGGGGGGGNSGGGGNYNDFGNYNS 373
Query: 349 GQT 341
Q+
Sbjct: 374 QQS 376
Score = 32.0 bits (71), Expect = 6.2
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Frame = -1
Query: 511 GRGNFGGGNFGGGRG--------GGYNGRNDF------ERRNEFSGRPRGGNNMGRNNG 377
GRG GGG GGG G GGYN NDF R+ + GR GNN G G
Sbjct: 209 GRGGGGGG--GGGGGNFNRYGNNGGYN--NDFGGGGGGGNRDGYFGRGGRGNNFGGGGG 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,979,313
Number of Sequences: 1393205
Number of extensions: 13865461
Number of successful extensions: 187883
Number of sequences better than 10.0: 2588
Number of HSP's better than 10.0 without gapping: 68864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126121
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
