Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004471A_C01 KMC004471A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA37408.1| GLP_383_1574_4366 [Giardia lamblia ATCC 50803] 32 3.6
ref|NP_704704.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.0
>gb|EAA37408.1| GLP_383_1574_4366 [Giardia lamblia ATCC 50803]
Length = 930
Score = 32.0 bits (71), Expect = 3.6
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 14/81 (17%)
Frame = +1
Query: 49 TKGLVAQRMRKRNGMSKFKTSRSS-NAMTNTNGQV--------AFEVSTRGQPKMDLY-- 195
T G+ ++ RN ++ TS S+ N N++ + + T G P D+Y
Sbjct: 372 TYGIQETKLTDRNRLANLGTSFSNINYPPNSDIDLYRSGDSFGEYNSRTLGAPSTDIYIS 431
Query: 196 ---KQKMILYDKIYLQLPTDS 249
+++ LYDK +QLPTDS
Sbjct: 432 HLTEERSFLYDKPSIQLPTDS 452
>ref|NP_704704.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505065|emb|CAD51847.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2506
Score = 30.8 bits (68), Expect = 8.0
Identities = 16/43 (37%), Positives = 22/43 (50%)
Frame = +1
Query: 13 TLHYYYAIMKKYTKGLVAQRMRKRNGMSKFKTSRSSNAMTNTN 141
TL+Y Y K Y + +K N KFK + +N+ TNTN
Sbjct: 1188 TLYYRYKTKKTYNNNYFLYKQKKIN--KKFKNFKINNSNTNTN 1228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,190,992
Number of Sequences: 1393205
Number of extensions: 7638837
Number of successful extensions: 15175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15168
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
