Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004470A_C01 KMC004470A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB92008.1| B1147B04.23 [Oryza sativa (japonica cultivar-gro... 74 9e-13
ref|NP_192893.2| putative protein; protein id: At4g11560.1, supp... 67 1e-10
pir||T10576 hypothetical protein F25E4.180 - Arabidopsis thalian... 67 1e-10
ref|XP_236272.1| similar to exophilin 5 [Homo sapiens] [Rattus n... 33 3.1
ref|NP_800692.1| methyl-accepting chemotaxis protein [Vibrio par... 33 3.1
>dbj|BAB92008.1| B1147B04.23 [Oryza sativa (japonica cultivar-group)]
gi|21328145|dbj|BAC00724.1| B1074C08.20 [Oryza sativa
(japonica cultivar-group)]
Length = 100
Score = 74.3 bits (181), Expect = 9e-13
Identities = 41/96 (42%), Positives = 59/96 (60%), Gaps = 3/96 (3%)
Frame = -3
Query: 539 LECVSCGNSWYASRDEVSSLTIDGSDSKK-SIGTAPWATAKFEVIQKKLLSPR--ESENS 369
LEC +CG+SW++SRD +++LT+D S S+GTAPWATAKF+V++K+L SPR + +
Sbjct: 2 LECNACGHSWFSSRDAITTLTVDTPTSAGGSVGTAPWATAKFDVMEKQLTSPRDHQPDKP 61
Query: 368 ANDISGKTNELGIAVNDTQKPIGMPKKDENVEATHA 261
D K+ + + QK G K DE A A
Sbjct: 62 LADALHKSAAPYMPTLEKQKSFGKHKPDEPSSAPAA 97
>ref|NP_192893.2| putative protein; protein id: At4g11560.1, supported by cDNA:
gi_19347809 [Arabidopsis thaliana]
gi|19347810|gb|AAL86355.1| unknown protein [Arabidopsis
thaliana] gi|22136724|gb|AAM91681.1| unknown protein
[Arabidopsis thaliana]
Length = 587
Score = 67.0 bits (162), Expect = 1e-10
Identities = 38/73 (52%), Positives = 45/73 (61%)
Frame = -3
Query: 557 HNDRYQLECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEVIQKKLLSPRES 378
H DRYQLECV CG SWYASRDEVS+LTI + P + E I+K L SPRE+
Sbjct: 510 HGDRYQLECVDCGYSWYASRDEVSTLTI--------VTDKPAQGTEKEDIEKNLTSPRET 561
Query: 377 ENSANDISGKTNE 339
N D + KTN+
Sbjct: 562 -NKPKDEALKTND 573
>pir||T10576 hypothetical protein F25E4.180 - Arabidopsis thaliana
gi|7267856|emb|CAB78199.1| putative protein [Arabidopsis
thaliana] gi|7321053|emb|CAB82161.1| putative protein
[Arabidopsis thaliana]
Length = 652
Score = 67.0 bits (162), Expect = 1e-10
Identities = 38/73 (52%), Positives = 45/73 (61%)
Frame = -3
Query: 557 HNDRYQLECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEVIQKKLLSPRES 378
H DRYQLECV CG SWYASRDEVS+LTI + P + E I+K L SPRE+
Sbjct: 575 HGDRYQLECVDCGYSWYASRDEVSTLTI--------VTDKPAQGTEKEDIEKNLTSPRET 626
Query: 377 ENSANDISGKTNE 339
N D + KTN+
Sbjct: 627 -NKPKDEALKTND 638
>ref|XP_236272.1| similar to exophilin 5 [Homo sapiens] [Rattus norvegicus]
Length = 2254
Score = 32.7 bits (73), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 539 LECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEVIQKKLLSPRESE 375
L +S GN WYA RD V++ D S + T+ + + + K+LS ES+
Sbjct: 1739 LTTISTGNGWYAWRDHVAAAVGDCSSRSQPRETSGTTGSDCQNLTDKMLSDSESQ 1793
>ref|NP_800692.1| methyl-accepting chemotaxis protein [Vibrio parahaemolyticus RIMD
2210633] gi|28809550|dbj|BAC62525.1| methyl-accepting
chemotaxis protein [Vibrio parahaemolyticus]
Length = 522
Score = 32.7 bits (73), Expect = 3.1
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -3
Query: 386 RESENSANDISGKTNELGIAVNDTQKPIGMPKKDENVEATHAD 258
+E E+SAN +S TN+ + ++DT K M K E ++ TH +
Sbjct: 284 QEVESSANSVSSSTNDAHMLIDDTLKSCMMAK--ETIDQTHTN 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,789,762
Number of Sequences: 1393205
Number of extensions: 9903339
Number of successful extensions: 27682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27679
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
