Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004468A_C01 KMC004468A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084806.1| ribosomal protein S16 [Lotus japonicus] gi|1419... 132 4e-30
ref|NP_783214.1| ribosomal protein S16 [Atropa belladonna] gi|20... 120 1e-26
ref|NP_054479.1| ribosomal protein S16 [Nicotiana tabacum] gi|13... 120 1e-26
sp|P32087|RR16_SOLTU Chloroplast 30S ribosomal protein S16 gi|74... 112 3e-24
emb|CAA77799.1| ribosomal protein S16 [Solanum tuberosum] 112 4e-24
>ref|NP_084806.1| ribosomal protein S16 [Lotus japonicus]
gi|14195185|sp|P58125|RR16_LOTJA Chloroplast 30S
ribosomal protein S16 gi|13358987|dbj|BAB33204.1|
ribosomal protein S16 [Lotus japonicus]
Length = 80
Score = 132 bits (331), Expect = 4e-30
Identities = 66/68 (97%), Positives = 66/68 (97%)
Frame = -2
Query: 227 Q*AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDILK 48
Q AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDI K
Sbjct: 13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDISK 72
Query: 47 KAGFFMDL 24
KAGFFMDL
Sbjct: 73 KAGFFMDL 80
>ref|NP_783214.1| ribosomal protein S16 [Atropa belladonna]
gi|20068313|emb|CAC88026.1| ribosomal protein S16
[Atropa belladonna]
Length = 88
Score = 120 bits (301), Expect = 1e-26
Identities = 60/71 (84%), Positives = 64/71 (89%)
Frame = -2
Query: 227 Q*AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDILK 48
Q AVYRIVAIDVRSRREG+DLRKVGFYDPIKNQTYLN+P IL FLE+GAQPTGTVQDILK
Sbjct: 13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILK 72
Query: 47 KAGFFMDL*PN 15
KA F +L PN
Sbjct: 73 KAEVFKELRPN 83
>ref|NP_054479.1| ribosomal protein S16 [Nicotiana tabacum]
gi|133814|sp|P06374|RR16_TOBAC Chloroplast 30S ribosomal
protein S16 gi|71001|pir||R3NT16 ribosomal protein S16,
chloroplast - common tobacco chloroplast
gi|11806|emb|CAA27149.1| ribosomal protein S16
[Nicotiana tabacum] gi|435266|emb|CAA77340.1| ribosomal
protein S16 [Nicotiana tabacum] gi|225241|prf||1211235C
ribosomal protein S16
Length = 85
Score = 120 bits (301), Expect = 1e-26
Identities = 60/71 (84%), Positives = 64/71 (89%)
Frame = -2
Query: 227 Q*AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDILK 48
Q AVYRIVAIDVRSRREG+DLRKVGFYDPIKNQTYLN+P IL FLE+GAQPTGTVQDILK
Sbjct: 13 QRAVYRIVAIDVRSRREGKDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVQDILK 72
Query: 47 KAGFFMDL*PN 15
KA F +L PN
Sbjct: 73 KAEVFKELRPN 83
>sp|P32087|RR16_SOLTU Chloroplast 30S ribosomal protein S16 gi|7440451|pir||T07057
ribosomal protein S16, chloroplast - potato
gi|516564|gb|AAA74421.1| ribosomal protein S16
Length = 88
Score = 112 bits (280), Expect = 3e-24
Identities = 56/68 (82%), Positives = 61/68 (89%)
Frame = -2
Query: 227 Q*AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDILK 48
Q AVYRIVAIDVRSRREG+DL+KVGFYDPIKNQTYLN+P IL FLE+GAQPT TVQDILK
Sbjct: 13 QRAVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQDILK 72
Query: 47 KAGFFMDL 24
KA F +L
Sbjct: 73 KAEVFKEL 80
>emb|CAA77799.1| ribosomal protein S16 [Solanum tuberosum]
Length = 74
Score = 112 bits (279), Expect = 4e-24
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = -2
Query: 221 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNIPVILNFLEQGAQPTGTVQDILKKA 42
AVYRIVAIDVRSRREG+DL+KVGFYDPIKNQTYLN+P IL FLE+GAQPT TVQDILKKA
Sbjct: 1 AVYRIVAIDVRSRREGKDLQKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVQDILKKA 60
Query: 41 GFFMDL 24
F +L
Sbjct: 61 EVFKEL 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,179,065
Number of Sequences: 1393205
Number of extensions: 9936766
Number of successful extensions: 19730
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 19044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19674
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
