Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004464A_C01 KMC004464A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179379.1| putative Ca2+-dependent ser/thr protein kinase;... 43 0.002
gb|AAL30819.1|AF435451_1 calcium/calmodulin-dependent protein ki... 41 0.011
gb|AAF23901.2|AF194414_1 calcium-dependent protein kinase [Oryza... 39 0.041
dbj|BAC20730.1| similar to calcium-dependent protein kinase [Ory... 39 0.041
ref|NP_201422.1| calcium-dependent protein kinase; protein id: A... 37 0.12
>ref|NP_179379.1| putative Ca2+-dependent ser/thr protein kinase; protein id:
At2g17890.1 [Arabidopsis thaliana]
gi|7446450|pir||T00835 calcium-dependent protein kinase
homolog At2g17890 - Arabidopsis thaliana
Length = 571
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/24 (91%), Positives = 22/24 (91%)
Frame = -2
Query: 544 KISLQEFRRLLRTASIGSRNVSSP 473
KISLQEFRRLLRTASI SRNV SP
Sbjct: 539 KISLQEFRRLLRTASIKSRNVRSP 562
>gb|AAL30819.1|AF435451_1 calcium/calmodulin-dependent protein kinase CaMK2 [Nicotiana
tabacum]
Length = 572
Score = 40.8 bits (94), Expect = 0.011
Identities = 21/27 (77%), Positives = 23/27 (84%)
Frame = -2
Query: 544 KISLQEFRRLLRTASIGSRNVSSPSHR 464
KISL EFRRLLRTASI SR V+SP+ R
Sbjct: 541 KISLSEFRRLLRTASISSRMVTSPTVR 567
>gb|AAF23901.2|AF194414_1 calcium-dependent protein kinase [Oryza sativa]
Length = 512
Score = 38.9 bits (89), Expect = 0.041
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2
Query: 544 KISLQEFRRLLRTASIGSRNVSSP 473
KISL EFRRLL+TAS+ SRNV +P
Sbjct: 483 KISLDEFRRLLKTASMSSRNVQTP 506
>dbj|BAC20730.1| similar to calcium-dependent protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 552
Score = 38.9 bits (89), Expect = 0.041
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2
Query: 544 KISLQEFRRLLRTASIGSRNVSSP 473
KISL EFRRLL+TAS+ SRNV +P
Sbjct: 523 KISLDEFRRLLKTASMSSRNVQTP 546
>ref|NP_201422.1| calcium-dependent protein kinase; protein id: At5g66210.1,
supported by cDNA: 18901. [Arabidopsis thaliana]
gi|10177136|dbj|BAB10426.1| calcium-dependent protein
kinase [Arabidopsis thaliana] gi|22655085|gb|AAM98133.1|
calcium-dependent protein kinase [Arabidopsis thaliana]
Length = 523
Score = 37.4 bits (85), Expect = 0.12
Identities = 20/28 (71%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = -2
Query: 544 KISLQEFRRLLRTASIGSRNVSSPS-HR 464
KISL EFRRLLRTASI S+ SP+ HR
Sbjct: 493 KISLHEFRRLLRTASISSQRAPSPAGHR 520
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,586,286
Number of Sequences: 1393205
Number of extensions: 7831577
Number of successful extensions: 15274
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15271
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
