>KMC004463A_C01 KMC004463A_c01
gatgctaacaaggaatgatgtcattgcatgcctaagcatagctggtttatgtggtcccta
ctccattgtcttccagccgcGTTAAATACTTGGATTACACCAAAGTTCGTATTAGCTTAG
TCTGGACCATGTTTAAACACATACATAATAATATACTAAACAAACAAACAAAGCTACATT
AACACTATCATTTCTCAGGTTAACGGATCAGAATCCTCTCATGTGGAAACTTCACACGAC
AGTGAAATGTTGAGATGAAATTGTGTCCATCTTTCTCTTCATAATTATTAAATAAGTAGG
AGTATCTTAATATTTATGAAGAGATATAGACAGACAAGTTTTCACATGCATGAGCGGATC
GTAATCCGGTGAAGGACAAAAAGAAATATAATGGTCACTTCCATGCTGAAGCAACAATCA
AGTTCTTGTCTTCCCACCCAAAATGAAGTGCCCCCATTTCATCCTTCATCTTGTACCTGT
CACAGTACTGCTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004463A_C01 KMC004463A_c01
         (493 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T51234 scarecrow-like protein 1 [imported] - Arabidopsis th...    57  8e-08
ref|NP_173566.1| scarecrow-like 1; protein id: At1g21450.1, supp...    57  8e-08
dbj|BAB90355.1| scarecrow-like protein [Oryza sativa (japonica c...    53  2e-06
gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [...    39  0.024
dbj|BAC42147.1| putative SCARECROW gene regulator [Arabidopsis t...    38  0.053

>pir||T51234 scarecrow-like protein 1 [imported] - Arabidopsis thaliana
           (fragment) gi|4580513|gb|AAD24403.1|AF036300_1
           scarecrow-like 1 [Arabidopsis thaliana]
          Length = 352

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 22/32 (68%), Positives = 30/32 (93%)
 Frame = -1

Query: 493 KQYCDRYKMKDEMGALHFGWEDKNLIVASAWK 398
           +QYC++YK+K+EMG LHF WE+K+LIVASAW+
Sbjct: 321 QQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 352

>ref|NP_173566.1| scarecrow-like 1; protein id: At1g21450.1, supported by cDNA:
           109490., supported by cDNA: gi_15027952, supported by
           cDNA: gi_20465586, supported by cDNA: gi_6644389
           [Arabidopsis thaliana] gi|25518102|pir||E86347
           scarecrow-like 1 protein F24J8.8 - Arabidopsis thaliana
           gi|6644390|gb|AAF21043.1|AF210731_1 scarecrow-like 1
           [Arabidopsis thaliana]
           gi|9454575|gb|AAF87898.1|AC015447_8 scarecrow-like 1
           protein [Arabidopsis thaliana]
           gi|15027953|gb|AAK76507.1| putative scarecrow 1 protein
           [Arabidopsis thaliana] gi|20465587|gb|AAM20276.1|
           unknown protein [Arabidopsis thaliana]
           gi|21536730|gb|AAM61062.1| scarecrow-like 1 [Arabidopsis
           thaliana]
          Length = 593

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 22/32 (68%), Positives = 30/32 (93%)
 Frame = -1

Query: 493 KQYCDRYKMKDEMGALHFGWEDKNLIVASAWK 398
           +QYC++YK+K+EMG LHF WE+K+LIVASAW+
Sbjct: 562 QQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593

>dbj|BAB90355.1| scarecrow-like protein [Oryza sativa (japonica cultivar-group)]
           gi|21952821|dbj|BAC06237.1| scarecrow-like protein
           [Oryza sativa (japonica cultivar-group)]
          Length = 553

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 20/32 (62%), Positives = 26/32 (80%)
 Frame = -1

Query: 493 KQYCDRYKMKDEMGALHFGWEDKNLIVASAWK 398
           K YCDRYK +++ G LHFGW +K LIV+SAW+
Sbjct: 522 KSYCDRYKFEEDHGGLHFGWGEKTLIVSSAWQ 553

>gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [Oryza sativa
           (japonica cultivar-group)] gi|27817840|dbj|BAC55608.1|
           OJ1127_E01.12 [Oryza sativa (japonica cultivar-group)]
          Length = 544

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 493 KQYCDRYKMKDEMGALHFGWEDKNLIVASAW 401
           + Y D YK+ +  GAL+ GW+ + L+V+SAW
Sbjct: 513 QSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543

>dbj|BAC42147.1| putative SCARECROW gene regulator [Arabidopsis thaliana]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.053
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -1

Query: 493 KQYCDRYKMKDEMGALHFGWEDKNLIVASAWK 398
           + Y D+Y++++  GAL+ GW  ++L+ + AWK
Sbjct: 380 RNYSDKYRLEERDGALYLGWMHRDLVASCAWK 411

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,740,942
Number of Sequences: 1393205
Number of extensions: 8435253
Number of successful extensions: 15522
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 15101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15522
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MWL021c05_f AV768921 1 345 2 MPDL021b10_f AV777543 88 504 3 MR042f02_f BP079263 97 389

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