Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004462A_C01 KMC004462A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63205.1|AF245119_1 AP2-related transcription factor [Mesem... 115 4e-25
pir||T51988 ethylene responsive element binding factor 1 [import... 115 5e-25
pir||A85196 EREBP-2 protein [imported] - Arabidopsis thaliana gi... 115 5e-25
sp|O80337|ERFI_ARATH Ethylene responsive element binding factor ... 115 5e-25
ref|NP_567530.1| ethylene responsive element binding factor 1 (f... 115 5e-25
>gb|AAF63205.1|AF245119_1 AP2-related transcription factor [Mesembryanthemum crystallinum]
Length = 282
Score = 115 bits (288), Expect = 4e-25
Identities = 70/113 (61%), Positives = 76/113 (66%), Gaps = 5/113 (4%)
Frame = -3
Query: 569 WLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVASKRFSSESCF--FS 396
WLGTFETAEDAALAYDRAA+RMRGS+A+LNFPLRVNSGEPDPVR+ SKR S E S
Sbjct: 164 WLGTFETAEDAALAYDRAAFRMRGSKALLNFPLRVNSGEPDPVRITSKRSSPERSVSSSS 223
Query: 395 SESGSPAKRKKVVVTAQVGLKTGQVG---SQVAQVTPGEQLLVS*C*QGCNVG 246
SES SP +RKK V VG GQ QV V G Q+ V GC VG
Sbjct: 224 SESASPKRRKKEEVV--VGPVAGQARPGLQQVGNVVEGMQVGV-----GCQVG 269
>pir||T51988 ethylene responsive element binding factor 1 [imported] -
Arabidopsis thaliana gi|3434967|dbj|BAA32418.1| ethylene
responsive element binding factor 1 [Arabidopsis
thaliana]
Length = 266
Score = 115 bits (287), Expect = 5e-25
Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Frame = -3
Query: 569 WLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVASKRFSSESCFFSSE 390
WLGTFETAEDAALAYDRAA+RMRGSRA+LNFPLRVNSGEPDPVR+ SKR S S S+E
Sbjct: 172 WLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSS---SNE 228
Query: 389 SGSPAKRKKVVVTAQVGLKTG-QVGSQVAQVTPGEQLLV 276
+G+P KR+ V A G+ G V +V +V G++LLV
Sbjct: 229 NGAPKKRR--TVAAGGGMDKGLTVKCEVVEVARGDRLLV 265
>pir||A85196 EREBP-2 protein [imported] - Arabidopsis thaliana
gi|5281024|emb|CAB45963.1| EREBP-2 protein [Arabidopsis
thaliana] gi|7268502|emb|CAB78753.1| EREBP-2 protein
[Arabidopsis thaliana]
Length = 225
Score = 115 bits (287), Expect = 5e-25
Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Frame = -3
Query: 569 WLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVASKRFSSESCFFSSE 390
WLGTFETAEDAALAYDRAA+RMRGSRA+LNFPLRVNSGEPDPVR+ SKR S S S+E
Sbjct: 131 WLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSS---SNE 187
Query: 389 SGSPAKRKKVVVTAQVGLKTG-QVGSQVAQVTPGEQLLV 276
+G+P KR+ V A G+ G V +V +V G++LLV
Sbjct: 188 NGAPKKRR--TVAAGGGMDKGLTVKCEVVEVARGDRLLV 224
>sp|O80337|ERFI_ARATH Ethylene responsive element binding factor 1 (AtERF1) (EREBP-2
protein) gi|16648795|gb|AAL25588.1| AT4g17500/dl4785w
[Arabidopsis thaliana] gi|17064914|gb|AAL32611.1|
Unknown protein [Arabidopsis thaliana]
gi|27311945|gb|AAO00938.1| Unknown protein [Arabidopsis
thaliana]
Length = 268
Score = 115 bits (287), Expect = 5e-25
Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Frame = -3
Query: 569 WLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVASKRFSSESCFFSSE 390
WLGTFETAEDAALAYDRAA+RMRGSRA+LNFPLRVNSGEPDPVR+ SKR S S S+E
Sbjct: 174 WLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSS---SNE 230
Query: 389 SGSPAKRKKVVVTAQVGLKTG-QVGSQVAQVTPGEQLLV 276
+G+P KR+ V A G+ G V +V +V G++LLV
Sbjct: 231 NGAPKKRR--TVAAGGGMDKGLTVKCEVVEVARGDRLLV 267
>ref|NP_567530.1| ethylene responsive element binding factor 1 (frameshift !);
protein id: At4g17500.1, supported by cDNA: gi_16648794,
supported by cDNA: gi_17064913, supported by cDNA:
gi_3434966 [Arabidopsis thaliana]
Length = 188
Score = 115 bits (287), Expect = 5e-25
Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Frame = -3
Query: 569 WLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVASKRFSSESCFFSSE 390
WLGTFETAEDAALAYDRAA+RMRGSRA+LNFPLRVNSGEPDPVR+ SKR S S S+E
Sbjct: 94 WLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSS---SNE 150
Query: 389 SGSPAKRKKVVVTAQVGLKTG-QVGSQVAQVTPGEQLLV 276
+G+P KR+ V A G+ G V +V +V G++LLV
Sbjct: 151 NGAPKKRR--TVAAGGGMDKGLTVKCEVVEVARGDRLLV 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,511,096
Number of Sequences: 1393205
Number of extensions: 13302055
Number of successful extensions: 64442
Number of sequences better than 10.0: 466
Number of HSP's better than 10.0 without gapping: 57857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63547
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
