Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004461A_C01 KMC004461A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_230756.1| similar to probable ligand-binding protein RYA3... 33 1.9
gb|EAA03388.1| agCP1956 [Anopheles gambiae str. PEST] 31 7.3
pir||TVFVSA env-sea polyprotein - avian erythroblastosis virus (... 31 9.6
>ref|XP_230756.1| similar to probable ligand-binding protein RYA3 - rat [Rattus
norvegicus]
Length = 1898
Score = 33.1 bits (74), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +1
Query: 301 AREVLDPLHESNLGKLTCIFSKAHSMALICDCKGNLTTVLRLT 429
A V+D + ESN+ T A S+A +C + + TTVLR+T
Sbjct: 868 ANSVVDVIEESNISMWTAWCVAALSVAAVCGIRQDTTTVLRVT 910
>gb|EAA03388.1| agCP1956 [Anopheles gambiae str. PEST]
Length = 357
Score = 31.2 bits (69), Expect = 7.3
Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 11/79 (13%)
Frame = +1
Query: 310 VLDP---------LHESNLGKL--TCIFSKAHSMALICDCKGNLTTVLRLTVRLILYPSK 456
VLDP E + GK T I +K+ + + K NL T+L L ++ SK
Sbjct: 149 VLDPSVQNDERSLFEEKSTGKYISTRILTKSFVVPFLLGLKFNLATLLPLVFGGLILLSK 208
Query: 457 KASIIH*VYLWLKCVFGEG 513
KA I+ + L+L +FG G
Sbjct: 209 KALILGKIALFLSGLFGYG 227
>pir||TVFVSA env-sea polyprotein - avian erythroblastosis virus (strain S13)
(fragment)
Length = 596
Score = 30.8 bits (68), Expect = 9.6
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Frame = +3
Query: 360 FKGSFHGSNM*L*RQPYHCA--ETHRQTNLISIE---------KGFHHSLSLSLAKMCL 503
F +HG+ M HCA HR T+L +E KGFHH LSL +CL
Sbjct: 297 FGSVYHGTYMDPLLGNLHCAVKSLHRITDLEEVEEFLREGILMKGFHHPQVLSLLGVCL 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,211,361
Number of Sequences: 1393205
Number of extensions: 7631538
Number of successful extensions: 12072
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12071
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
