Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004460A_C01 KMC004460A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192386.1| putative ABC transporter; protein id: At4g04770... 183 1e-45
ref|NP_680390.1| similar to putative ABC transporter; protein id... 181 4e-45
ref|NP_681280.1| ABC transporter subunit [Thermosynechococcus el... 156 2e-37
dbj|BAB68118.1| putative ABC transporter [Oryza sativa (japonica... 152 3e-36
ref|NP_442472.1| ABC transporter subunit [Synechocystis sp. PCC ... 150 8e-36
>ref|NP_192386.1| putative ABC transporter; protein id: At4g04770.1, supported by
cDNA: gi_15529142, supported by cDNA: gi_15912264
[Arabidopsis thaliana] gi|25317705|pir||A85060 probable
ABC transporter [imported] - Arabidopsis thaliana
gi|4115931|gb|AAD03441.1| contains similarity to
Guillardia theta ABC transporter (GB:AF041468)
[Arabidopsis thaliana] gi|7267235|emb|CAB80842.1|
putative ABC transporter [Arabidopsis thaliana]
gi|15529143|gb|AAK97666.1| AT4g04770/T4B21_16
[Arabidopsis thaliana] gi|15912265|gb|AAL08266.1|
AT4g04770/T4B21_16 [Arabidopsis thaliana]
gi|22655482|gb|AAM98333.1| At4g04770/T4B21_16
[Arabidopsis thaliana]
Length = 557
Score = 183 bits (465), Expect = 1e-45
Identities = 87/100 (87%), Positives = 97/100 (97%)
Frame = -2
Query: 550 AENAQNKSQCDSMLIGDKAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDY 371
AE A+N S CDSMLIGDKAAANTYPYIQVKNP+A++EHEASTSKIGEDQLFYFQQRGID+
Sbjct: 458 AEGAKNTSTCDSMLIGDKAAANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDH 517
Query: 370 EKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG 251
E+A+AAMISGFCRDVFN+LPDEFG+EVNQLMS+KLEGSVG
Sbjct: 518 ERALAAMISGFCRDVFNKLPDEFGAEVNQLMSIKLEGSVG 557
>ref|NP_680390.1| similar to putative ABC transporter; protein id: At5g44316.1
[Arabidopsis thaliana]
Length = 470
Score = 181 bits (460), Expect = 4e-45
Identities = 86/100 (86%), Positives = 97/100 (97%)
Frame = -2
Query: 550 AENAQNKSQCDSMLIGDKAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDY 371
AENA+N S CDSMLIGD AAANTYPYIQVKNP+ARIEHEASTSKIGEDQ+FYFQQRGID+
Sbjct: 371 AENARNTSTCDSMLIGDNAAANTYPYIQVKNPSARIEHEASTSKIGEDQIFYFQQRGIDH 430
Query: 370 EKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG 251
E+A+AAMISGFCRDVFN+LP+EFG+EVNQL+S+KLEGSVG
Sbjct: 431 ERALAAMISGFCRDVFNKLPNEFGAEVNQLLSIKLEGSVG 470
>ref|NP_681280.1| ABC transporter subunit [Thermosynechococcus elongatus BP-1]
gi|22294211|dbj|BAC08042.1| ABC transporter subunit
[Thermosynechococcus elongatus BP-1]
Length = 478
Score = 156 bits (394), Expect = 2e-37
Identities = 76/100 (76%), Positives = 87/100 (87%)
Frame = -2
Query: 550 AENAQNKSQCDSMLIGDKAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDY 371
A A+N SQCDSMLIGD AAANT+PYIQV+NPTA++EHEASTSKIGEDQLFYF QRGI
Sbjct: 379 ATGARNYSQCDSMLIGDTAAANTFPYIQVQNPTAQVEHEASTSKIGEDQLFYFAQRGISA 438
Query: 370 EKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG 251
E A++ MISGFCRDVFN+LP EF E ++L+SLKLEGSVG
Sbjct: 439 EDAVSMMISGFCRDVFNQLPMEFAVEADRLLSLKLEGSVG 478
>dbj|BAB68118.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|20160641|dbj|BAB89586.1| putative ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 544
Score = 152 bits (384), Expect = 3e-36
Identities = 76/100 (76%), Positives = 85/100 (85%)
Frame = -2
Query: 550 AENAQNKSQCDSMLIGDKAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDY 371
AENA N SQCDS+LIGD AAANTYP IQV ++R+EHEASTSKIGEDQLFYFQQRGID+
Sbjct: 445 AENAYNSSQCDSLLIGDNAAANTYPTIQVGCISSRVEHEASTSKIGEDQLFYFQQRGIDH 504
Query: 370 EKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG 251
EKA+AAMI GFCR VF LP EF E++ LM+LKLEGSVG
Sbjct: 505 EKAVAAMIGGFCRAVFENLPYEFAHEMDALMNLKLEGSVG 544
>ref|NP_442472.1| ABC transporter subunit [Synechocystis sp. PCC 6803]
gi|3024872|sp|Q55790|Y074_SYNY3 Hypothetical protein
slr0074 gi|7448276|pir||S76598 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
gi|1001705|dbj|BAA10542.1| ABC transporter subunit
[Synechocystis sp. PCC 6803]
Length = 480
Score = 150 bits (380), Expect = 8e-36
Identities = 71/100 (71%), Positives = 87/100 (87%)
Frame = -2
Query: 550 AENAQNKSQCDSMLIGDKAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDY 371
A+ A+N SQCDSMLIGD+AAANT+PYIQV N TA++EHEASTSKIGEDQLFYF QRGI
Sbjct: 381 AQGARNYSQCDSMLIGDRAAANTFPYIQVDNNTAKVEHEASTSKIGEDQLFYFAQRGISE 440
Query: 370 EKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG 251
E A++ ++SGFC+DV NELP EF +E ++L+SLKLEG+VG
Sbjct: 441 EDAVSMLVSGFCKDVLNELPMEFAAEADKLLSLKLEGTVG 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,830,423
Number of Sequences: 1393205
Number of extensions: 9156875
Number of successful extensions: 22249
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 21786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22246
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
