Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004457A_C01 KMC004457A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC81754.1| corticotropin-releasing factor receptor type 2 [... 32 3.6
ref|XP_194229.1| protein tyrosine phosphatase, non-receptor type... 32 6.2
dbj|BAC37876.1| unnamed protein product [Mus musculus] 32 6.2
pir||S71625 protein-tyrosine-phosphatase (EC 3.1.3.48), nonrecep... 32 6.2
dbj|BAA12158.1| protein tyrosine phosphatase [Mus musculus] 32 6.2
>emb|CAC81754.1| corticotropin-releasing factor receptor type 2 [Oncorhynchus keta]
Length = 414
Score = 32.3 bits (72), Expect = 3.6
Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 2/71 (2%)
Frame = -2
Query: 245 VFLFFKRVSLPKSFVVTCDQSVDQSNYRVWNQVNPCWFSPLGSCSINYVYH--IGLILLI 72
VFLF + + C V + +++N+ CWF I+Y+Y + L+LLI
Sbjct: 229 VFLFI-------GWCIPCPIIVAWAIGKLYNENEQCWFGKEPGKYIDYIYQGPVILVLLI 281
Query: 71 KLAYLIEIVHI 39
+L IV I
Sbjct: 282 NFVFLFNIVRI 292
>ref|XP_194229.1| protein tyrosine phosphatase, non-receptor type 13 [Mus musculus]
Length = 2451
Score = 31.6 bits (70), Expect = 6.2
Identities = 13/47 (27%), Positives = 24/47 (50%)
Frame = +2
Query: 161 LYS*TDQLIDHKSQQKTWEEKPF*KTRKQSRITPADICPSKNSMINL 301
LY K+ + +WEEKP ++ ++ A +CP + +IN+
Sbjct: 935 LYQPLQNSSKEKTDKASWEEKPRGMSKSYHDLSQASLCPHRKQVINM 981
>dbj|BAC37876.1| unnamed protein product [Mus musculus]
Length = 1113
Score = 31.6 bits (70), Expect = 6.2
Identities = 13/47 (27%), Positives = 24/47 (50%)
Frame = +2
Query: 161 LYS*TDQLIDHKSQQKTWEEKPF*KTRKQSRITPADICPSKNSMINL 301
LY K+ + +WEEKP ++ ++ A +CP + +IN+
Sbjct: 1033 LYQPLQNSSKEKTDKASWEEKPRGMSKSYHDLSQASLCPHRKQVINM 1079
>pir||S71625 protein-tyrosine-phosphatase (EC 3.1.3.48), nonreceptor type 13 -
mouse
Length = 2450
Score = 31.6 bits (70), Expect = 6.2
Identities = 13/47 (27%), Positives = 24/47 (50%)
Frame = +2
Query: 161 LYS*TDQLIDHKSQQKTWEEKPF*KTRKQSRITPADICPSKNSMINL 301
LY K+ + +WEEKP ++ ++ A +CP + +IN+
Sbjct: 934 LYQPLQNSSKEKTDKASWEEKPRGMSKSYHDLSQASLCPHRKQVINM 980
>dbj|BAA12158.1| protein tyrosine phosphatase [Mus musculus]
Length = 2450
Score = 31.6 bits (70), Expect = 6.2
Identities = 13/47 (27%), Positives = 24/47 (50%)
Frame = +2
Query: 161 LYS*TDQLIDHKSQQKTWEEKPF*KTRKQSRITPADICPSKNSMINL 301
LY K+ + +WEEKP ++ ++ A +CP + +IN+
Sbjct: 934 LYQPLQNSSKEKTDKASWEEKPRGMSKSYHDLSQASLCPHRKQVINM 980
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,365,418
Number of Sequences: 1393205
Number of extensions: 8242374
Number of successful extensions: 27652
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27652
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
