Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004455A_C01 KMC004455A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194749.1| putative protein; protein id: At4g30200.1, supp... 86 3e-16
gb|AAO00859.1| putative protein [Arabidopsis thaliana] 86 3e-16
ref|NP_189087.1| hypothetical protein; protein id: At3g24440.1 [... 78 5e-14
ref|NP_200548.1| putative protein; protein id: At5g57380.1 [Arab... 75 6e-13
ref|NP_179477.1| unknown protein; protein id: At2g18870.1 [Arabi... 74 1e-12
>ref|NP_194749.1| putative protein; protein id: At4g30200.1, supported by cDNA:
gi_11177136 [Arabidopsis thaliana]
gi|7486763|pir||T14080 hypothetical protein F9N11.50 -
Arabidopsis thaliana gi|5730130|emb|CAB52464.1| putative
protein [Arabidopsis thaliana]
gi|7269920|emb|CAB81013.1| putative protein [Arabidopsis
thaliana] gi|11177137|dbj|BAB17836.1| nuclear
coiled-coil protein AT4g30200 [Arabidopsis thaliana]
Length = 714
Score = 85.9 bits (211), Expect = 3e-16
Identities = 39/70 (55%), Positives = 52/70 (73%)
Frame = -2
Query: 494 ENDYEYSVRVVKLLEHQGHIDEIFRVKFLTWFSLKATQQERRVVSAFVDALIDDPASLAD 315
E+ E+ V++++ LE GHID+ FR KFLTW+SL+AT QE RVV F+D IDDP +LA+
Sbjct: 619 ESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDTFIDDPMALAE 678
Query: 314 QLIHTFSDEI 285
QLI TF D +
Sbjct: 679 QLIDTFDDRV 688
>gb|AAO00859.1| putative protein [Arabidopsis thaliana]
Length = 685
Score = 85.9 bits (211), Expect = 3e-16
Identities = 39/70 (55%), Positives = 52/70 (73%)
Frame = -2
Query: 494 ENDYEYSVRVVKLLEHQGHIDEIFRVKFLTWFSLKATQQERRVVSAFVDALIDDPASLAD 315
E+ E+ V++++ LE GHID+ FR KFLTW+SL+AT QE RVV F+D IDDP +LA+
Sbjct: 590 ESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDTFIDDPMALAE 649
Query: 314 QLIHTFSDEI 285
QLI TF D +
Sbjct: 650 QLIDTFDDRV 659
>ref|NP_189087.1| hypothetical protein; protein id: At3g24440.1 [Arabidopsis
thaliana] gi|9294095|dbj|BAB01947.1|
emb|CAB52464.1~gene_id:MXP5.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 602
Score = 78.2 bits (191), Expect = 5e-14
Identities = 37/72 (51%), Positives = 50/72 (69%)
Frame = -2
Query: 500 SRENDYEYSVRVVKLLEHQGHIDEIFRVKFLTWFSLKATQQERRVVSAFVDALIDDPASL 321
S ++ E V+V++ LE +GHI FRV+FLTWFS+ +T QE+ VVS FV L DDP SL
Sbjct: 518 SIDDTLEKCVKVIRWLEREGHIKTTFRVRFLTWFSMSSTAQEQSVVSTFVQTLEDDPGSL 577
Query: 320 ADQLIHTFSDEI 285
A QL+ F+D +
Sbjct: 578 AGQLVDAFTDVV 589
>ref|NP_200548.1| putative protein; protein id: At5g57380.1 [Arabidopsis thaliana]
gi|9757932|dbj|BAB08475.1|
gene_id:MSF19.4~pir||T14080~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 600
Score = 74.7 bits (182), Expect = 6e-13
Identities = 33/70 (47%), Positives = 50/70 (71%)
Frame = -2
Query: 494 ENDYEYSVRVVKLLEHQGHIDEIFRVKFLTWFSLKATQQERRVVSAFVDALIDDPASLAD 315
+ D + V+ ++ LE +GHID+ FR +FLTW+SL+AT +E RVV FV+ ++D +SL
Sbjct: 510 DKDLGHIVKTIRCLEEEGHIDKSFRERFLTWYSLRATHREVRVVKIFVETFMEDLSSLGQ 569
Query: 314 QLIHTFSDEI 285
QL+ TFS+ I
Sbjct: 570 QLVDTFSESI 579
>ref|NP_179477.1| unknown protein; protein id: At2g18870.1 [Arabidopsis thaliana]
gi|7485789|pir||T01615 hypothetical protein At2g18870
[imported] - Arabidopsis thaliana
gi|3004550|gb|AAC09023.1| unknown protein [Arabidopsis
thaliana]
Length = 302
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/64 (51%), Positives = 47/64 (72%)
Frame = -2
Query: 482 EYSVRVVKLLEHQGHIDEIFRVKFLTWFSLKATQQERRVVSAFVDALIDDPASLADQLIH 303
E V++++ LE G+++ FR KFLTWFSL+AT QER V+ F++A DD +LA+QL+
Sbjct: 56 EQCVKIIRKLECSGYVESTFRQKFLTWFSLRATSQERNTVTTFMNAFNDDSMALAEQLVD 115
Query: 302 TFSD 291
TFSD
Sbjct: 116 TFSD 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,858,401
Number of Sequences: 1393205
Number of extensions: 7844580
Number of successful extensions: 16441
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16263
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
