Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004454A_C01 KMC004454A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566562.1| dihydrolipoamide dehydrogenase, putative; prote... 136 2e-31
ref|NP_567487.1| Expressed protein; protein id: At4g16155.1, sup... 131 6e-30
dbj|BAB63876.1| putative lipoamide dehydrogenase [Oryza sativa (... 131 8e-30
gb|AAK70920.1|AC087551_19 putative lipoamide dehydrogenase [Oryz... 124 1e-27
gb|ZP_00111840.1| hypothetical protein [Nostoc punctiforme] 94 1e-18
>ref|NP_566562.1| dihydrolipoamide dehydrogenase, putative; protein id: At3g16950.1,
supported by cDNA: gi_15215695, supported by cDNA:
gi_7159281 [Arabidopsis thaliana]
gi|7159282|gb|AAF37698.1|AF228637_1 lipoamide
dehydrogenase [Arabidopsis thaliana]
gi|15215696|gb|AAK91394.1| AT3g16950/K14A17_7
[Arabidopsis thaliana] gi|21464567|gb|AAM52238.1|
AT3g16950/K14A17_7 [Arabidopsis thaliana]
Length = 570
Score = 136 bits (343), Expect = 2e-31
Identities = 70/82 (85%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -1
Query: 634 GIAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDLKLAVHAHPTLSEVLDE 455
GIAK+IYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQD+KLAVHAHPTLSEVLDE
Sbjct: 489 GIAKMIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDE 548
Query: 454 LFKSAKVKEQASS-PVSEPVAV 392
LFK+AKV+ A++ VSE V V
Sbjct: 549 LFKAAKVESHATTRTVSEKVVV 570
>ref|NP_567487.1| Expressed protein; protein id: At4g16155.1, supported by cDNA:
gi_15292886, supported by cDNA: gi_15809855, supported
by cDNA: gi_21281172, supported by cDNA: gi_7159283
[Arabidopsis thaliana]
gi|7159284|gb|AAF37699.1|AF228638_1 lipoamide
dehydrogenase [Arabidopsis thaliana]
gi|15292887|gb|AAK92814.1| unknown protein [Arabidopsis
thaliana] gi|15809856|gb|AAL06856.1| AT3g16950/K14A17_7
[Arabidopsis thaliana] gi|21281173|gb|AAM45006.1|
unknown protein [Arabidopsis thaliana]
Length = 567
Score = 131 bits (330), Expect = 6e-30
Identities = 64/72 (88%), Positives = 69/72 (94%)
Frame = -1
Query: 634 GIAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDLKLAVHAHPTLSEVLDE 455
G+AK+IYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQD+KLAVHAHPTLSEV+DE
Sbjct: 486 GLAKMIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVVDE 545
Query: 454 LFKSAKVKEQAS 419
LFK+AKV AS
Sbjct: 546 LFKAAKVDSPAS 557
>dbj|BAB63876.1| putative lipoamide dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 561
Score = 131 bits (329), Expect = 8e-30
Identities = 64/80 (80%), Positives = 70/80 (87%)
Frame = -1
Query: 634 GIAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDLKLAVHAHPTLSEVLDE 455
G+AK+IYRPD GEILGVHI GLHAADLIHEASNAIALGTR+QD+K AVHAHPTLSEVLDE
Sbjct: 481 GLAKMIYRPDTGEILGVHILGLHAADLIHEASNAIALGTRVQDIKFAVHAHPTLSEVLDE 540
Query: 454 LFKSAKVKEQASSPVSEPVA 395
LFK+AKV V+EPVA
Sbjct: 541 LFKAAKVNAGVPHSVNEPVA 560
>gb|AAK70920.1|AC087551_19 putative lipoamide dehydrogenase [Oryza sativa]
Length = 563
Score = 124 bits (311), Expect = 1e-27
Identities = 60/67 (89%), Positives = 64/67 (94%)
Frame = -1
Query: 634 GIAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDLKLAVHAHPTLSEVLDE 455
G+AKLIYRPD GEILGVHI GLHAADLIHEASNAIALGTR+QD+K AVHAHPTLSEVLDE
Sbjct: 487 GLAKLIYRPDTGEILGVHILGLHAADLIHEASNAIALGTRLQDIKFAVHAHPTLSEVLDE 546
Query: 454 LFKSAKV 434
LFK+AKV
Sbjct: 547 LFKAAKV 553
>gb|ZP_00111840.1| hypothetical protein [Nostoc punctiforme]
Length = 476
Score = 94.4 bits (233), Expect = 1e-18
Identities = 47/65 (72%), Positives = 52/65 (79%)
Frame = -1
Query: 634 GIAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDLKLAVHAHPTLSEVLDE 455
GIAK+IYR D GE+LGVHIFGLHA+DLIHEAS AIA +Q L VHAHPTLSEVLDE
Sbjct: 409 GIAKVIYRKDTGEVLGVHIFGLHASDLIHEASAAIANRQSVQSLAHLVHAHPTLSEVLDE 468
Query: 454 LFKSA 440
+K A
Sbjct: 469 AYKRA 473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,456,226
Number of Sequences: 1393205
Number of extensions: 10151592
Number of successful extensions: 26442
Number of sequences better than 10.0: 504
Number of HSP's better than 10.0 without gapping: 25763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26427
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
