Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004452A_C01 KMC004452A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 49 3e-05
ref|NP_542616.1| E6 protein [Phocoena spinipinnis papillomavirus... 32 6.5
ref|NP_771281.1| blr4641 [Bradyrhizobium japonicum] gi|27352905|... 31 8.5
ref|NP_701342.1| MAEBL, putative [Plasmodium falciparum 3D7] gi|... 31 8.5
gb|ZP_00069580.1| hypothetical protein [Oenococcus oeni MCW] 31 8.5
>gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata]
Length = 3148
Score = 49.3 bits (116), Expect = 3e-05
Identities = 26/101 (25%), Positives = 56/101 (54%)
Frame = -1
Query: 543 CYPSYPVSLRDPHVTKCLDLDVKIPNEMFVDGAPPPVSIMYRFCYKVTDYLRGVKAQRSN 364
CYP+ +SL+D +V K + L +K N + G+ PV+++++ YK + + +
Sbjct: 147 CYPNITISLKDKNVLKSMILQIKTHNYKMIKGS-IPVALIFKISYKAMVSAFSTQHRFQS 205
Query: 363 PVNETDVIETHIALYSSEITRILKHDRIAYPEEWLPGRSSP 241
+ET +++T ++ ++ I + ++ I PEEW+ ++P
Sbjct: 206 KRDETLLLQTDLSRANTVIPKPIQWKDINLPEEWILEGAAP 246
>ref|NP_542616.1| E6 protein [Phocoena spinipinnis papillomavirus]
gi|18076064|emb|CAC80269.1| E6 protein [Phocoena
spinipinnis papillomavirus]
Length = 211
Score = 31.6 bits (70), Expect = 6.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 239 IGDERPGSHSSGYAIRSCLSIRVISEEYRAIWVSITSVSFTGLLLWAFTP 388
I D+RP + SGY CL+ ++S+T+ T L+ W F P
Sbjct: 116 IEDKRPFTKVSGYWRGFCLNCLTTPPPLTRYFISVTNTGRTPLISWGFDP 165
>ref|NP_771281.1| blr4641 [Bradyrhizobium japonicum] gi|27352905|dbj|BAC49906.1|
blr4641 [Bradyrhizobium japonicum USDA 110]
Length = 235
Score = 31.2 bits (69), Expect = 8.5
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = -1
Query: 510 PHVTKCLDLDVKIPNEMFVDGAPPPVSIMYR---FCYKVTDYLRGVKAQRSNPVNETDVI 340
P V + L + +PN++FVD S+ + C+ V+D +R A R +P +++
Sbjct: 123 PSVAIQIPLTLPVPNQLFVDQVTEGRSLAHSSCGTCHVVSDGVREAPAFRPSPPGFLEIV 182
Query: 339 ETHIALYSSEITRIL--KHDRIAYPEEWLP 256
+ + E+ R L H R+ PE+ +P
Sbjct: 183 -NRPSFSADELRRFLASSHRRLG-PEQLMP 210
>ref|NP_701342.1| MAEBL, putative [Plasmodium falciparum 3D7]
gi|20087019|gb|AAL10509.1| maebl [Plasmodium falciparum]
gi|22086284|gb|AAM90625.1|AF400002_1 chimeric
erythrocyte-binding protein MAEBL [Plasmodium
falciparum] gi|23496410|gb|AAN36066.1|AE014843_30 MAEBL,
putative [Plasmodium falciparum 3D7]
Length = 2055
Score = 31.2 bits (69), Expect = 8.5
Identities = 22/74 (29%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 1 ESNFQYHSILSRSITN*ESII----KNLKYKDTSTIYHYKREHYKNERQLEITSNIIQTR 168
E++F + + + S ++II KN K+ S++ H+K N+R L +N R
Sbjct: 418 ENHFSFTILTANSFNLNQNIIYPELKNNSSKEGSSLIHFKDPKQTNKRVL-YENNKKSKR 476
Query: 169 NVNTELNLVGSGTV 210
NV T++N V T+
Sbjct: 477 NVRTKINSVNPFTI 490
>gb|ZP_00069580.1| hypothetical protein [Oenococcus oeni MCW]
Length = 185
Score = 31.2 bits (69), Expect = 8.5
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = -3
Query: 265 MAPRTFIPNPDRLISRSKPLFLTQLS*ALC*HFLFG*CWKLFLIVFRFYNVLSCNDK*WM 86
++P FI NPD L++ + L+ L F FG IVF ++
Sbjct: 87 LSPILFILNPDILLNFQSKANIENLASLLIVMFFFGVLLLFVAIVFALTSLFKAP----R 142
Query: 85 CLCILSFL*CSLNL*YSYLILN 20
L I++F +NL Y Y I+N
Sbjct: 143 SLAIIAFFFSMINLFYVYTIIN 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,295,055
Number of Sequences: 1393205
Number of extensions: 9724223
Number of successful extensions: 23618
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23604
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
