Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004450A_C01 KMC004450A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_285613.1| cell division protein FtsH [Deinococcus radiodu... 46 5e-04
ref|NP_596797.1| putative mitochondrial respiratory chain comple... 44 0.001
ref|ZP_00121458.1| hypothetical protein [Bifidobacterium longum ... 44 0.002
ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in... 44 0.002
ref|NP_006787.1| AFG3 ATPase family gene 3-like 2; ATPase family... 42 0.007
>ref|NP_285613.1| cell division protein FtsH [Deinococcus radiodurans]
gi|7471226|pir||G75582 cell division protein FtsH -
Deinococcus radiodurans (strain R1)
gi|6460771|gb|AAF12476.1|AE001863_101 cell division
protein FtsH [Deinococcus radiodurans]
Length = 655
Score = 45.8 bits (107), Expect = 5e-04
Identities = 20/56 (35%), Positives = 36/56 (63%)
Frame = +3
Query: 456 HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTSSHLMTRKKLIDEMVISM 623
HE+GHAV AV+ G +KL +++P LG YL LM++++L +++V+++
Sbjct: 462 HEAGHAVTAAVIPGSDKLQKVSIIPRGRALGAAFYLPEEQVLMSKERLENQLVVAL 517
>ref|NP_596797.1| putative mitochondrial respiratory chain complexes assembly protein
[Schizosaccharomyces pombe] gi|9929276|emb|CAC05251.1|
putative mitochondrial respiratory chain complexes
assembly protein [Schizosaccharomyces pombe]
Length = 773
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +3
Query: 456 HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTSSHLMTRKKLIDEMVISMA 626
HE+GHAVA + V+ L +++P LG YL +LM+R +++D+M +++A
Sbjct: 561 HEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQYLMSRGQILDQMGMALA 617
>ref|ZP_00121458.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 697
Score = 43.5 bits (101), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
Frame = +3
Query: 438 LWNTCVHESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTSS-HLMTRKKLIDEMV 614
L NT HE GHA+ A L+ + + T++P LG T + TS + +R +L+D+M
Sbjct: 473 LRNTAYHEGGHALVAAALNNTDPVTKVTILPRGRALGYTAVMPTSDRYSQSRNQLLDQMA 532
Query: 615 ISM 623
+M
Sbjct: 533 YAM 535
>ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division
[Bifidobacterium longum NCC2705]
gi|23326975|gb|AAN25469.1|AE014802_6 ATP-dependent zinc
metallopeptidase involved in cell division
[Bifidobacterium longum NCC2705]
Length = 696
Score = 43.5 bits (101), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
Frame = +3
Query: 438 LWNTCVHESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTSS-HLMTRKKLIDEMV 614
L NT HE GHA+ A L+ + + T++P LG T + TS + +R +L+D+M
Sbjct: 472 LRNTAYHEGGHALVAAALNNTDPVTKVTILPRGRALGYTAVMPTSDRYSQSRNQLLDQMA 531
Query: 615 ISM 623
+M
Sbjct: 532 YAM 534
>ref|NP_006787.1| AFG3 ATPase family gene 3-like 2; ATPase family gene 3-like 2;
ATPase family gene 3, yeast; AFG3 (ATPase family gene 3,
yeast)-like 2 [Homo sapiens]
gi|13431287|sp|Q9Y4W6|AF32_HUMAN AFG3-like protein 2
(Paraplegin-like protein) gi|5457357|emb|CAB48398.1|
paraplegin-like protein [Homo sapiens]
Length = 797
Score = 42.0 bits (97), Expect = 0.007
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +3
Query: 456 HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTSSHLMTRKKLIDEMVISM 623
HE+GHAVA L + L +++P LG +YL +L T+++L+D M +++
Sbjct: 574 HEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYTKEQLLDRMCMTL 629
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,248,443
Number of Sequences: 1393205
Number of extensions: 11661510
Number of successful extensions: 32678
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 31478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32637
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
