KMC004445A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC004445A_C01 KMC004445A_c01
agagatAGACAAAGTGGAAAAGTTATATATGAAAATCCGAATAGGACAAACCATCATCAC
ACTCGATCGTTTATTAATTTTCAACCTACAGATCGAGAAAAGAAAGAAAGAAAAACATCA
CTCTAGTAGATACATGCATTAAGTTTTGATTAAAAATCACAAGTGGTTTATGGCAAGCAT
TCGGGAAGGGCTAGGAAGATGATAGGAGGAGCGAGAACGTTGTTTCACAAAAGCACATCC
ATGAGGCTGAGGCTGATCAGGAGTAGACGTTTCTTCATCCATTTCCATCAACACCTTGTA
AAACACATCAACGTTGCAAGGAAGGACTATAGGGCCTTGGCTGCTATAACCATATTCTGA
CTCAGCTTCTTCAAGCAACATCTTAAACAAAGGGTGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004445A_C01 KMC004445A_c01
         (397 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199889.1| putative protein; protein id: At5g50760.1 [Arab...    62  1e-09
dbj|BAB90661.1| B1033B05.12 [Oryza sativa (japonica cultivar-gro...    60  7e-09
ref|NP_200171.1| unknown protein; protein id: At5g53590.1 [Arabi...    55  2e-07
ref|NP_191749.1| putative protein; protein id: At3g61900.1 [Arab...    51  3e-06
ref|NP_182192.1| putative auxin-regulated protein; protein id: A...    50  9e-06

>ref|NP_199889.1| putative protein; protein id: At5g50760.1 [Arabidopsis thaliana]
           gi|8777399|dbj|BAA96989.1|
           emb|CAB86483.1~gene_id:MFB16.16~similar to unknown
           protein [Arabidopsis thaliana]
          Length = 183

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = -2

Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEM 280
           HPLFK LLE+AE+EYGY   GPIVLPC VD F+K L +M
Sbjct: 80  HPLFKNLLEDAETEYGYRRDGPIVLPCEVDFFFKALADM 118

>dbj|BAB90661.1| B1033B05.12 [Oryza sativa (japonica cultivar-group)]
          Length = 214

 Score = 60.1 bits (144), Expect = 7e-09
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 18/94 (19%)
 Frame = -2

Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEE------------------ 271
           HPLF+ LL++AE EYGY++QGP+ LPC VD F  VL +M+ +                  
Sbjct: 108 HPLFRRLLDDAEREYGYAAQGPLALPCAVDAFLDVLWQMERDGCGGGGDDDDDLSIGGGG 167

Query: 270 TSTPDQPQPHGCAFVKQRSRSSYHLPSPSRMLAI 169
            ++P    P  C    + + + Y + SP+RM +I
Sbjct: 168 AASPICGLP-SCGSKGRAAAAGYRMLSPARMTSI 200

>ref|NP_200171.1| unknown protein; protein id: At5g53590.1 [Arabidopsis thaliana]
           gi|9759198|dbj|BAB09735.1| gene_id:MNC6.13~unknown
           protein [Arabidopsis thaliana]
          Length = 122

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 27/53 (50%), Positives = 31/53 (57%)
 Frame = -2

Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQPHG 238
           HPLF  LL+EAE EYG+   GPI +PC VD F  V   +DEET        HG
Sbjct: 56  HPLFLDLLKEAEKEYGFKHDGPITIPCGVDEFKHVQEVIDEETHRRHSHGGHG 108

>ref|NP_191749.1| putative protein; protein id: At3g61900.1 [Arabidopsis thaliana]
           gi|11357589|pir||T47982 hypothetical protein F21F14.70 -
           Arabidopsis thaliana gi|6899888|emb|CAB71897.1| putative
           protein [Arabidopsis thaliana]
          Length = 136

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 31/73 (42%), Positives = 38/73 (51%), Gaps = 9/73 (12%)
 Frame = -2

Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQ---------P 244
           HPLF  LL EAE EYG+  +G I +PC+V+VF  V   ++ E S  D             
Sbjct: 58  HPLFMQLLREAEEEYGFEQKGTITIPCHVEVFRYVQDMINRERSLDDDDDASKQTGCGAK 117

Query: 243 HGCAFVKQRSRSS 205
           HG    K RSRSS
Sbjct: 118 HGLTH-KIRSRSS 129

>ref|NP_182192.1| putative auxin-regulated protein; protein id: At2g46690.1
           [Arabidopsis thaliana] gi|25409022|pir||A84906 probable
           auxin-regulated protein [imported] - Arabidopsis
           thaliana gi|3831443|gb|AAC69926.1| putative
           auxin-regulated protein [Arabidopsis thaliana]
           gi|28950689|gb|AAO63268.1| At2g46690 [Arabidopsis
           thaliana]
          Length = 121

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 26/66 (39%), Positives = 35/66 (52%)
 Frame = -2

Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQPHGCAFVKQR 217
           HPLF  LL+EAE EYG+  +G I +PC+V+ F  V   +D E S  +    H     +  
Sbjct: 52  HPLFMQLLKEAEDEYGFDQKGTITIPCHVEEFRYVQALIDGERSVYNGNNHHH----RHG 107

Query: 216 SRSSYH 199
            R  YH
Sbjct: 108 GRDQYH 113

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,733,963
Number of Sequences: 1393205
Number of extensions: 6068180
Number of successful extensions: 13567
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 13331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13560
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MR040b11_f BP079075 1 397
2 MR054d06_f BP080161 7 125




Lotus japonicus
Kazusa DNA Research Institute