KMC004445A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004445A_C01 KMC004445A_c01
agagatAGACAAAGTGGAAAAGTTATATATGAAAATCCGAATAGGACAAACCATCATCAC
ACTCGATCGTTTATTAATTTTCAACCTACAGATCGAGAAAAGAAAGAAAGAAAAACATCA
CTCTAGTAGATACATGCATTAAGTTTTGATTAAAAATCACAAGTGGTTTATGGCAAGCAT
TCGGGAAGGGCTAGGAAGATGATAGGAGGAGCGAGAACGTTGTTTCACAAAAGCACATCC
ATGAGGCTGAGGCTGATCAGGAGTAGACGTTTCTTCATCCATTTCCATCAACACCTTGTA
AAACACATCAACGTTGCAAGGAAGGACTATAGGGCCTTGGCTGCTATAACCATATTCTGA
CTCAGCTTCTTCAAGCAACATCTTAAACAAAGGGTGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004445A_C01 KMC004445A_c01
(397 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199889.1| putative protein; protein id: At5g50760.1 [Arab... 62 1e-09
dbj|BAB90661.1| B1033B05.12 [Oryza sativa (japonica cultivar-gro... 60 7e-09
ref|NP_200171.1| unknown protein; protein id: At5g53590.1 [Arabi... 55 2e-07
ref|NP_191749.1| putative protein; protein id: At3g61900.1 [Arab... 51 3e-06
ref|NP_182192.1| putative auxin-regulated protein; protein id: A... 50 9e-06
>ref|NP_199889.1| putative protein; protein id: At5g50760.1 [Arabidopsis thaliana]
gi|8777399|dbj|BAA96989.1|
emb|CAB86483.1~gene_id:MFB16.16~similar to unknown
protein [Arabidopsis thaliana]
Length = 183
Score = 62.4 bits (150), Expect = 1e-09
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -2
Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEM 280
HPLFK LLE+AE+EYGY GPIVLPC VD F+K L +M
Sbjct: 80 HPLFKNLLEDAETEYGYRRDGPIVLPCEVDFFFKALADM 118
>dbj|BAB90661.1| B1033B05.12 [Oryza sativa (japonica cultivar-group)]
Length = 214
Score = 60.1 bits (144), Expect = 7e-09
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 18/94 (19%)
Frame = -2
Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEE------------------ 271
HPLF+ LL++AE EYGY++QGP+ LPC VD F VL +M+ +
Sbjct: 108 HPLFRRLLDDAEREYGYAAQGPLALPCAVDAFLDVLWQMERDGCGGGGDDDDDLSIGGGG 167
Query: 270 TSTPDQPQPHGCAFVKQRSRSSYHLPSPSRMLAI 169
++P P C + + + Y + SP+RM +I
Sbjct: 168 AASPICGLP-SCGSKGRAAAAGYRMLSPARMTSI 200
>ref|NP_200171.1| unknown protein; protein id: At5g53590.1 [Arabidopsis thaliana]
gi|9759198|dbj|BAB09735.1| gene_id:MNC6.13~unknown
protein [Arabidopsis thaliana]
Length = 122
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/53 (50%), Positives = 31/53 (57%)
Frame = -2
Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQPHG 238
HPLF LL+EAE EYG+ GPI +PC VD F V +DEET HG
Sbjct: 56 HPLFLDLLKEAEKEYGFKHDGPITIPCGVDEFKHVQEVIDEETHRRHSHGGHG 108
>ref|NP_191749.1| putative protein; protein id: At3g61900.1 [Arabidopsis thaliana]
gi|11357589|pir||T47982 hypothetical protein F21F14.70 -
Arabidopsis thaliana gi|6899888|emb|CAB71897.1| putative
protein [Arabidopsis thaliana]
Length = 136
Score = 51.2 bits (121), Expect = 3e-06
Identities = 31/73 (42%), Positives = 38/73 (51%), Gaps = 9/73 (12%)
Frame = -2
Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQ---------P 244
HPLF LL EAE EYG+ +G I +PC+V+VF V ++ E S D
Sbjct: 58 HPLFMQLLREAEEEYGFEQKGTITIPCHVEVFRYVQDMINRERSLDDDDDASKQTGCGAK 117
Query: 243 HGCAFVKQRSRSS 205
HG K RSRSS
Sbjct: 118 HGLTH-KIRSRSS 129
>ref|NP_182192.1| putative auxin-regulated protein; protein id: At2g46690.1
[Arabidopsis thaliana] gi|25409022|pir||A84906 probable
auxin-regulated protein [imported] - Arabidopsis
thaliana gi|3831443|gb|AAC69926.1| putative
auxin-regulated protein [Arabidopsis thaliana]
gi|28950689|gb|AAO63268.1| At2g46690 [Arabidopsis
thaliana]
Length = 121
Score = 49.7 bits (117), Expect = 9e-06
Identities = 26/66 (39%), Positives = 35/66 (52%)
Frame = -2
Query: 396 HPLFKMLLEEAESEYGYSSQGPIVLPCNVDVFYKVLMEMDEETSTPDQPQPHGCAFVKQR 217
HPLF LL+EAE EYG+ +G I +PC+V+ F V +D E S + H +
Sbjct: 52 HPLFMQLLKEAEDEYGFDQKGTITIPCHVEEFRYVQALIDGERSVYNGNNHHH----RHG 107
Query: 216 SRSSYH 199
R YH
Sbjct: 108 GRDQYH 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,733,963
Number of Sequences: 1393205
Number of extensions: 6068180
Number of successful extensions: 13567
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 13331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13560
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR040b11_f |
BP079075 |
1 |
397 |
2 |
MR054d06_f |
BP080161 |
7 |
125 |
|
Lotus japonicus
Kazusa DNA Research Institute