Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004441A_C01 KMC004441A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197955.1| GATA zinc finger protein; protein id: At5g25830... 104 1e-21
ref|NP_195015.1| GATA zinc finger protein; protein id: At4g32890... 103 3e-21
dbj|BAC05593.1| OSJNBa0014K08.18 [Oryza sativa (japonica cultiva... 100 2e-20
ref|NP_182031.1| GATA zinc finger protein; protein id: At2g45050... 97 3e-19
ref|NP_191612.1| GATA zinc finger protein; protein id: At3g60530... 89 7e-17
>ref|NP_197955.1| GATA zinc finger protein; protein id: At5g25830.1 [Arabidopsis
thaliana]
Length = 331
Score = 104 bits (259), Expect = 1e-21
Identities = 55/106 (51%), Positives = 69/106 (64%), Gaps = 5/106 (4%)
Frame = -2
Query: 682 TLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQRQQQQQL---- 515
TLCNACGVR+KSGRLV EYRPAASPTFV A+HSNSHRKV+ELRRQK+M R + +
Sbjct: 241 TLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMSRAHHEFIHHHH 300
Query: 514 -MSQSSIFGGSNGGDEFMIRHHHQHHHHQQQQQQQQHCGPEFRHVI 380
+ IF S+ GD+++I H + GP+FR +I
Sbjct: 301 GTDTAMIFDVSSDGDDYLIHH---------------NVGPDFRQLI 331
>ref|NP_195015.1| GATA zinc finger protein; protein id: At4g32890.1 [Arabidopsis
thaliana] gi|7486206|pir||T05297 hypothetical protein
F26P21.10 - Arabidopsis thaliana
gi|3688170|emb|CAA21198.1| putative protein [Arabidopsis
thaliana] gi|7270236|emb|CAB80006.1| putative protein
[Arabidopsis thaliana] gi|26449440|dbj|BAC41847.1|
unknown protein [Arabidopsis thaliana]
Length = 308
Score = 103 bits (256), Expect = 3e-21
Identities = 52/102 (50%), Positives = 70/102 (67%), Gaps = 1/102 (0%)
Frame = -2
Query: 682 TLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQRQQ-QQQLMSQ 506
TLCNACGVR+KSGRLV EYRPA+SPTFV ARHSNSHRKV+ELRRQK+M+ + QL +
Sbjct: 219 TLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEMRDEHLLSQLRCE 278
Query: 505 SSIFGGSNGGDEFMIRHHHQHHHHQQQQQQQQHCGPEFRHVI 380
+ + + G++F++ ++ H P+FRH+I
Sbjct: 279 NLLMDIRSNGEDFLMHNN------------TNHVAPDFRHLI 308
>dbj|BAC05593.1| OSJNBa0014K08.18 [Oryza sativa (japonica cultivar-group)]
Length = 387
Score = 100 bits (249), Expect = 2e-20
Identities = 54/95 (56%), Positives = 65/95 (67%), Gaps = 18/95 (18%)
Frame = -2
Query: 682 TLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQRQ----QQQQL 515
TLCNACGVR+KSGRLV EYRPAASPTF+ ++HSNSHRKVLELRRQK+M +Q Q Q+
Sbjct: 284 TLCNACGVRYKSGRLVPEYRPAASPTFMVSKHSNSHRKVLELRRQKEMHQQTPHHHQPQV 343
Query: 514 -----------MSQSSIFGGSN---GGDEFMIRHH 452
M S +F G + GD+F+I HH
Sbjct: 344 AAAGGVGSLMHMQSSMLFDGVSPVVSGDDFLIHHH 378
>ref|NP_182031.1| GATA zinc finger protein; protein id: At2g45050.1 [Arabidopsis
thaliana] gi|25352345|pir||T52104 GATA-binding
transcription factor homolog 2 [imported] - Arabidopsis
thaliana gi|2959732|emb|CAA74000.1| homologous to
GATA-binding transcription factors [Arabidopsis
thaliana] gi|24030302|gb|AAN41321.1| putative GATA-type
zinc finger transcription factor [Arabidopsis thaliana]
Length = 264
Score = 96.7 bits (239), Expect = 3e-19
Identities = 48/81 (59%), Positives = 55/81 (67%)
Frame = -2
Query: 682 TLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQRQQQQQLMSQS 503
TLCNACGVRFKSGRLV EYRPA+SPTFV +HSNSHRKV+ELRRQK++ RQ QQ
Sbjct: 201 TLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVMRQPQQ------ 254
Query: 502 SIFGGSNGGDEFMIRHHHQHH 440
++ HH HH
Sbjct: 255 -------------VQLHHHHH 262
>ref|NP_191612.1| GATA zinc finger protein; protein id: At3g60530.1, supported by
cDNA: gi_14190406, supported by cDNA: gi_14517394,
supported by cDNA: gi_15215890 [Arabidopsis thaliana]
gi|11282352|pir||T47864 GATA transcription factor 4 -
Arabidopsis thaliana gi|2959736|emb|CAA74002.1|
homologous to GATA-binding transcription factors
[Arabidopsis thaliana] gi|7288001|emb|CAB81839.1| GATA
transcription factor 4 [Arabidopsis thaliana]
gi|14190407|gb|AAK55684.1|AF378881_1 AT3g60530/T8B10_190
[Arabidopsis thaliana] gi|14517395|gb|AAK62588.1|
AT3g60530/T8B10_190 [Arabidopsis thaliana]
gi|15215891|gb|AAK91489.1| AT3g60530/T8B10_190
[Arabidopsis thaliana]
Length = 240
Score = 88.6 bits (218), Expect = 7e-17
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = -2
Query: 682 TLCNACGVRFKSGRLVAEYRPAASPTFVSARHSNSHRKVLELRRQKDMQ 536
TLCNACGVR+KSGRLV EYRPA+SPTFV +HSNSHRKV+ELRRQK+ Q
Sbjct: 180 TLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEQQ 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,916,690
Number of Sequences: 1393205
Number of extensions: 13081852
Number of successful extensions: 182512
Number of sequences better than 10.0: 1650
Number of HSP's better than 10.0 without gapping: 77032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135481
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
