Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004438A_C01 KMC004438A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172094.1| salt-tolerance protein; protein id: At1g06040.1... 105 3e-22
pir||A84720 hypothetical protein At2g31380 [imported] - Arabidop... 92 6e-18
ref|NP_565722.1| salt tolerance-like protein; protein id: At2g31... 87 2e-16
dbj|BAA33201.1| zinc finger protein [Oryza sativa (japonica cult... 79 6e-14
dbj|BAA33203.1| zinc finger protein [Oryza sativa (japonica cult... 71 1e-11
>ref|NP_172094.1| salt-tolerance protein; protein id: At1g06040.1, supported by cDNA:
39912., supported by cDNA: gi_15027874, supported by
cDNA: gi_19310754 [Arabidopsis thaliana]
gi|17433180|sp|Q96288|STO_ARATH Salt-tolerance protein
gi|25406890|pir||E86195 hypothetical protein [imported]
- Arabidopsis thaliana gi|1565225|emb|CAA64819.1|
salt-tolerance protein [Arabidopsis thaliana]
gi|8810467|gb|AAF80128.1|AC024174_10 Identical to
salt-tolerance protein from Arabidopsis thaliana
gb|X95572 and is a member of the Constans zinc finger
family PF|01760. ESTs gb|AV526483, gb|AV527296,
gb|BE038943, gb|AI995008, gb|H36917, gb|BE038755,
gb|N38572, gb|AV560515, gb|AV559505, gb|AV543507,
gb|AV542266, gb|AV558585, gb|AV441406, gb|AV520315,
gb|AV519515, gb|AV563886, gb|AV560014, gb|AV521968,
gb|N95904, gb|N96557 come from this gene
gi|15027875|gb|AAK76468.1| putative salt-tolerance
protein [Arabidopsis thaliana]
gi|19310755|gb|AAL85108.1| putative salt-tolerance
protein [Arabidopsis thaliana]
Length = 248
Score = 105 bits (263), Expect = 3e-22
Identities = 57/114 (50%), Positives = 72/114 (63%), Gaps = 7/114 (6%)
Frame = -2
Query: 593 VPVKTPSQQVPSFTSS----WAVDDLLELTDFESPDKKQSLEFG--ELEWLADAGLFSEQ 432
+P K+ SQQ +S+ WAVDD +D ES DKK L+ G EL+W +D G F +Q
Sbjct: 132 IPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQ 191
Query: 431 FPHEGLAAAEVPQLSVTHTSSVVSYKAPKSFMSHKKPRIEV-IDEDDDEHFTVP 273
+ L AAEVP+LSV+H V SYK KS +SHKKPR E D+DD+EHF VP
Sbjct: 192 INDKALPAAEVPELSVSHLGHVHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVP 245
>pir||A84720 hypothetical protein At2g31380 [imported] - Arabidopsis thaliana
Length = 237
Score = 91.7 bits (226), Expect = 6e-18
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = -2
Query: 584 KTPSQQVPSFTSSWAVDDLLELTDFESPDKKQSLEFGELEWLADAGLFSEQFPHEGLAAA 405
K P+QQ + + WA D+ +D + +KK+ L+ GEL+WLA+ GLF +Q E L A
Sbjct: 130 KPPTQQPAAPSPLWATDEFFSYSDLDCSNKKEQLDLGELDWLAEMGLFGDQPDQEALPVA 189
Query: 404 EVPQLSVTHTSSVVSYKAP-KSFMSHKKPRIEVIDEDDDEHFTVP 273
EVP+LS +H + SY P KS + +KK R+E +D++EHF VP
Sbjct: 190 EVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVP 234
>ref|NP_565722.1| salt tolerance-like protein; protein id: At2g31380.1, supported by
cDNA: gi_12698721, supported by cDNA: gi_13272412,
supported by cDNA: gi_13878096, supported by cDNA:
gi_17104764 [Arabidopsis thaliana]
gi|17433195|sp|Q9SID1|STH_ARATH Salt tolerance-like
protein gi|12698722|gb|AAK01658.1|AF323666_1 B-box zinc
finger protein STH [Arabidopsis thaliana]
gi|13272413|gb|AAK17145.1|AF325077_1 putative
CONSTANS-like B-box zinc finger protein [Arabidopsis
thaliana] gi|13878097|gb|AAK44126.1|AF370311_1 putative
CONSTANS B-box zinc finger protein [Arabidopsis
thaliana] gi|17104765|gb|AAL34271.1| putative CONSTANS
B-box zinc finger protein [Arabidopsis thaliana]
gi|20198155|gb|AAD26481.2| putative CONSTANS-like B-box
zinc finger protein [Arabidopsis thaliana]
Length = 238
Score = 87.0 bits (214), Expect = 2e-16
Identities = 45/106 (42%), Positives = 66/106 (61%), Gaps = 2/106 (1%)
Frame = -2
Query: 584 KTPSQQVPSFTSSWAVDDLLELTDFESPDK-KQSLEFGELEWLADAGLFSEQFPHEGLAA 408
K P+QQ + + WA D+ +D + +K K+ L+ GEL+WLA+ GLF +Q E L
Sbjct: 130 KPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLDLGELDWLAEMGLFGDQPDQEALPV 189
Query: 407 AEVPQLSVTHTSSVVSYKAP-KSFMSHKKPRIEVIDEDDDEHFTVP 273
AEVP+LS +H + SY P KS + +KK R+E +D++EHF VP
Sbjct: 190 AEVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVP 235
>dbj|BAA33201.1| zinc finger protein [Oryza sativa (japonica cultivar-group)]
gi|21740789|emb|CAD41534.1| OSJNBb0091E11.3 [Oryza
sativa (japonica cultivar-group)]
Length = 257
Score = 78.6 bits (192), Expect = 6e-14
Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 8/113 (7%)
Frame = -2
Query: 587 VKTPSQQVPSFT----SSWAVDDLLELTDFESPDKKQS-LEFGELEWLADAGLFSEQFPH 423
V +Q+VPS S WAV+DLL+L+D+ES DKK S + F +LEWL D LF Q P
Sbjct: 144 VSAAAQEVPSSPFLPPSGWAVEDLLQLSDYESSDKKGSPIGFKDLEWLDDIDLFHVQSPA 203
Query: 422 E-GLAAAEVPQL--SVTHTSSVVSYKAPKSFMSHKKPRIEVIDEDDDEHFTVP 273
+ G AAEVP+L S S++ YKA + S KKPR+E+ D DD++ F VP
Sbjct: 204 KGGSTAAEVPELFASPQPASNMGLYKASGARQS-KKPRVEIPD-DDEDFFIVP 254
>dbj|BAA33203.1| zinc finger protein [Oryza sativa (japonica cultivar-group)]
Length = 271
Score = 70.9 bits (172), Expect = 1e-11
Identities = 47/122 (38%), Positives = 63/122 (51%), Gaps = 21/122 (17%)
Frame = -2
Query: 593 VPVKTPSQQVPSFTSSWAVDDLLELTDFESPDKKQS-----LEFGELEWLADAGLFSEQF 429
V V TPS Q WAVD+LL+ +D+E+ DK Q L F ELEW AD LF Q
Sbjct: 144 VAVDTPSPQF--LPQGWAVDELLQFSDYETGDKLQKESSPPLGFQELEWFADIDLFHNQA 201
Query: 428 PHEGLAA----AEVPQLSVTHTSSVVSYKAPKS------------FMSHKKPRIEVIDED 297
P G AA AEVP+L + ++ V+Y P + F KK R+E+ D++
Sbjct: 202 PKGGAAAGRTTAEVPELFASQAANDVAYYRPPTRTAAAAFTAATGFRQSKKARVELPDDE 261
Query: 296 DD 291
+D
Sbjct: 262 ED 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,629,337
Number of Sequences: 1393205
Number of extensions: 10004038
Number of successful extensions: 26094
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 24421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25878
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
