Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004436A_C01 KMC004436A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176193.1| hypothetical protein; protein id: At1g59840.1 [... 136 2e-31
ref|ZP_00071380.1| hypothetical protein [Trichodesmium erythraeu... 78 7e-14
ref|NP_441729.1| unknown protein [Synechocystis sp. PCC 6803] gi... 78 9e-14
gb|ZP_00109579.1| hypothetical protein [Nostoc punctiforme] 74 2e-12
ref|NP_487861.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 73 3e-12
>ref|NP_176193.1| hypothetical protein; protein id: At1g59840.1 [Arabidopsis
thaliana] gi|25404238|pir||E96622 hypothetical protein
F23H11.16 [imported] - Arabidopsis thaliana
gi|5080827|gb|AAD39336.1|AC007258_25 Hypothetical
protein [Arabidopsis thaliana]
Length = 305
Score = 136 bits (343), Expect = 2e-31
Identities = 69/97 (71%), Positives = 83/97 (85%), Gaps = 8/97 (8%)
Frame = -3
Query: 576 VDINKLIQGSVYQGVMKSGA--------QSYLANLSLYPGKSELSFLPSNTQAVILQPLG 421
V +KL+QGSVY+GVMKS A +SYLANLSLYPG+SEL FLP+NTQAVILQPLG
Sbjct: 197 VKTDKLMQGSVYRGVMKSKARKNNDCLSESYLANLSLYPGRSELPFLPANTQAVILQPLG 256
Query: 420 DKGIAIIGGDTIRGFTTSDQAWITFIGDKLDSTLAKH 310
DKGIA+IGG+TIRGFT+SDQAWI+ IG+KLD+TL ++
Sbjct: 257 DKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 293
>ref|ZP_00071380.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 214
Score = 78.2 bits (191), Expect = 7e-14
Identities = 35/80 (43%), Positives = 52/80 (64%)
Frame = -3
Query: 552 GSVYQGVMKSGAQSYLANLSLYPGKSELSFLPSNTQAVILQPLGDKGIAIIGGDTIRGFT 373
G++ + V+ YL +L +YPG+ E ++LP NTQ VI QPLG+ G+ I+G + R +T
Sbjct: 133 GTILKQVLGKQKPIYLVDLKVYPGRIEFNYLPENTQGVICQPLGNNGVMILGANAPRSYT 192
Query: 372 TSDQAWITFIGDKLDSTLAK 313
D+ WI+ I DKL TL+K
Sbjct: 193 KQDENWISGIADKLTDTLSK 212
>ref|NP_441729.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469449|pir||S76150
hypothetical protein - Synechocystis sp. (strain PCC
6803) gi|1653496|dbj|BAA18409.1| ORF_ID:slr0948~unknown
protein [Synechocystis sp. PCC 6803]
Length = 215
Score = 77.8 bits (190), Expect = 9e-14
Identities = 34/79 (43%), Positives = 52/79 (65%)
Frame = -3
Query: 552 GSVYQGVMKSGAQSYLANLSLYPGKSELSFLPSNTQAVILQPLGDKGIAIIGGDTIRGFT 373
G + + VM++ YL NL LYPG+ E +LP+NTQ +I QPL D+G+ I+G + R +T
Sbjct: 132 GPIVERVMQTQKPVYLVNLPLYPGRVEFDYLPANTQGLICQPLDDRGVLILGANIPRSYT 191
Query: 372 TSDQAWITFIGDKLDSTLA 316
D+ W+T I DK+ +L+
Sbjct: 192 KQDENWVTGIADKIAHSLS 210
>gb|ZP_00109579.1| hypothetical protein [Nostoc punctiforme]
Length = 212
Score = 73.6 bits (179), Expect = 2e-12
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = -3
Query: 567 NKLIQGSVYQGVMKSGAQSYLANLSLYPGKSELSFLPSNTQAVILQPLGDKGIAIIGGDT 388
++++ G + + V++ YL L +YPG+ E +LP NTQ VI QP+G++G I+G +
Sbjct: 128 SEVVPGVILKQVLEKQKPIYLVALKIYPGRLEFDYLPENTQGVICQPIGNQGALILGANA 187
Query: 387 IRGFTTSDQAWITFIGDKLDSTLA 316
R +T D+ WI I DKL TL+
Sbjct: 188 PRSYTKQDENWIAGIADKLAVTLS 211
>ref|NP_487861.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25359381|pir||AF2283
hypothetical protein all3821 [imported] - Nostoc sp.
(strain PCC 7120) gi|17132955|dbj|BAB75520.1|
ORF_ID:all3821~hypothetical protein [Nostoc sp. PCC
7120]
Length = 213
Score = 72.8 bits (177), Expect = 3e-12
Identities = 33/78 (42%), Positives = 49/78 (62%)
Frame = -3
Query: 552 GSVYQGVMKSGAQSYLANLSLYPGKSELSFLPSNTQAVILQPLGDKGIAIIGGDTIRGFT 373
G++ + V++ YL L +YPG+ E +LP NTQ VI QP+G++G+ I+G + R +T
Sbjct: 133 GAIVKRVLEKQQPVYLVALYVYPGRIEFDYLPENTQGVICQPIGNEGVLILGANAPRSYT 192
Query: 372 TSDQAWITFIGDKLDSTL 319
D+ WI I DKL TL
Sbjct: 193 KQDENWIAGIADKLAVTL 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,727,540
Number of Sequences: 1393205
Number of extensions: 9626083
Number of successful extensions: 20350
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 19788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20348
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
