Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004435A_C01 KMC004435A_c01
(393 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177616.1| hypothetical protein; protein id: At1g74780.1 [... 160 4e-39
ref|NP_180982.1| nodulin-like protein; protein id: At2g34350.1 [... 149 8e-36
ref|NP_173328.1| hypothetical protein; protein id: At1g18940.1 [... 148 2e-35
ref|NP_181454.1| nodulin-like protein; protein id: At2g39210.1, ... 105 2e-22
ref|NP_180379.1| nodulin-like protein; protein id: At2g28120.1, ... 100 8e-21
>ref|NP_177616.1| hypothetical protein; protein id: At1g74780.1 [Arabidopsis
thaliana] gi|25370605|pir||B96777 hypothetical protein
F25A4.25 [imported] - Arabidopsis thaliana
gi|5882744|gb|AAD55297.1|AC008263_28 Strong similarity
to gb|AF031243 nodule-specific protein (Nlj70) from
Lotus japonicus and is a member of the PF|00083 Sugar
(and other) transporter family. EST gb|Z37715 comes
from this gene. [Arabidopsis thaliana]
Length = 533
Score = 160 bits (405), Expect = 4e-39
Identities = 70/113 (61%), Positives = 92/113 (80%)
Frame = -3
Query: 391 LGPVLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDRE 212
+G V+VG+ YG+ WSLMPTITSE+FG++HMGTIFNTI+ ASPIGSYI SVR++GYIYD+
Sbjct: 420 VGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKT 479
Query: 211 AIEEDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLVVLRRLKH 53
A E N+C+G HCF LSF I+A VAF FLV + L+FRT+ Y+ ++++RL H
Sbjct: 480 ASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532
>ref|NP_180982.1| nodulin-like protein; protein id: At2g34350.1 [Arabidopsis thaliana]
gi|7485467|pir||T02323 nodulin-like protein [imported] -
Arabidopsis thaliana gi|3337366|gb|AAC27411.1|
nodulin-like protein [Arabidopsis thaliana]
Length = 2301
Score = 149 bits (376), Expect = 8e-36
Identities = 69/109 (63%), Positives = 85/109 (77%)
Frame = -3
Query: 388 GPVLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDREA 209
G VL+G++YG+ WSLMPTITSEIFG++HMGTI+ TI+ A PIGSYILSV+V+GY YD+ A
Sbjct: 1028 GSVLIGMAYGSQWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVA 1087
Query: 208 IEEDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLVVLRR 62
E+DNSCFG CF SF I+A VA LV L+FRT KFYK +V +R
Sbjct: 1088 SEDDNSCFGSQCFRTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKR 1136
Score = 147 bits (370), Expect = 4e-35
Identities = 67/111 (60%), Positives = 87/111 (78%)
Frame = -3
Query: 391 LGPVLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDRE 212
+G +LVG++YG+ WSLMPTITSEIFGV HMGTIF TI+ ASP+GSY SV+V+GY+YD+
Sbjct: 413 IGSLLVGLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKV 472
Query: 211 AIEEDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLVVLRRL 59
A E+D+SC+G HCF SF I+A +A L LV L L RT+KFY +V +R+
Sbjct: 473 ASEDDHSCYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKRI 523
>ref|NP_173328.1| hypothetical protein; protein id: At1g18940.1 [Arabidopsis
thaliana] gi|8778273|gb|AAF79282.1|AC068602_5 F14D16.8
[Arabidopsis thaliana]
Length = 526
Score = 148 bits (373), Expect = 2e-35
Identities = 66/105 (62%), Positives = 84/105 (79%)
Frame = -3
Query: 388 GPVLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDREA 209
G ++VGI YG+ WSLMPTITSE+FGVKHMGTI+NTI+ ASP+GSYI SVR++GYIYDR
Sbjct: 414 GSIIVGICYGSQWSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTI 473
Query: 208 IEEDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLV 74
I E N+C+G HCF L++ ++A VAFL FLV L FRT+ Y+ +
Sbjct: 474 IGEGNTCYGPHCFRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQI 518
>ref|NP_181454.1| nodulin-like protein; protein id: At2g39210.1, supported by cDNA:
gi_16930478 [Arabidopsis thaliana]
gi|7487051|pir||T02581 nodulin-like protein [imported] -
Arabidopsis thaliana gi|3402684|gb|AAC28987.1|
nodulin-like protein [Arabidopsis thaliana]
gi|16930479|gb|AAL31925.1|AF419593_1 At2g39210/T16B24.15
[Arabidopsis thaliana]
Length = 601
Score = 105 bits (261), Expect = 2e-22
Identities = 53/124 (42%), Positives = 75/124 (59%), Gaps = 12/124 (9%)
Frame = -3
Query: 382 VLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDREAIE 203
V++G +GA W L+ I SEIFG+K+ T++N + ASPIGSY+L+VRV GY+YD EA +
Sbjct: 444 VIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGK 503
Query: 202 ------------EDNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLVVLRRL 59
+D +C G CF LSF I+A V LV + L RT+KFYK + ++
Sbjct: 504 QYKALGKTRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKKF 563
Query: 58 KHYA 47
+ A
Sbjct: 564 REKA 567
>ref|NP_180379.1| nodulin-like protein; protein id: At2g28120.1, supported by cDNA:
gi_16209713, supported by cDNA: gi_17064921, supported
by cDNA: gi_20259957 [Arabidopsis thaliana]
gi|25370601|pir||A84681 nodulin-like protein [imported]
- Arabidopsis thaliana gi|4063746|gb|AAC98454.1|
nodulin-like protein [Arabidopsis thaliana]
gi|16209714|gb|AAL14413.1| At2g28120/F24D13.9
[Arabidopsis thaliana] gi|17064922|gb|AAL32615.1|
nodulin-like protein [Arabidopsis thaliana]
gi|20259958|gb|AAM13326.1| nodulin-like protein
[Arabidopsis thaliana]
Length = 577
Score = 99.8 bits (247), Expect = 8e-21
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 12/124 (9%)
Frame = -3
Query: 391 LGPVLVGISYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPIGSYILSVRVVGYIYDRE 212
+ +L+G S+GA L+ I SE+FG+K+ T+FN ASP+GSYIL+VRV G +YD+E
Sbjct: 432 IASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKE 491
Query: 211 AIEE------------DNSCFGIHCFMLSFFILAGVAFLSFLVGLALYFRTQKFYKLVVL 68
A+++ D +C G C+ L F ILA V F LV L L RT++FYK +
Sbjct: 492 ALKQLTARGLTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIY 551
Query: 67 RRLK 56
++ +
Sbjct: 552 KKFR 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,877,579
Number of Sequences: 1393205
Number of extensions: 7514679
Number of successful extensions: 19231
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 18536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19198
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
