KMC004433A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC004433A_C01 KMC004433A_c01
attagagcttatctACTAGAAAATGCACTAAATAAACTTCAATTAGTGCTCTTCAGTTGG
TATCCAAAAGGTGCTAAACTTTGAATGGCAAATGGCACTCCCAAATCTACTATATTTACC
ACAAAACACATTAATTAGACAAAGAAAACACTGTCAATACATCGATTAATATCAATAGCT
AATCACAAAATTATCTTACGAACTATGCCACCTCCCAAGAGCCTCACCAACACGAATTCT
ATCCCCATGTTTGACACAGAAATTGAAGTCCTGTGATGAATCACCCTCGTGATTCAGTTT
CGAAATCGGAGCTTGGAAAACAAGTACAACGGTTGATCCCATGTTGAAAGCACCTACCTC
ATTCCCTTTCTTGAGTATTCTGCCAACACCATCACAATCATAAACTCGCTCTTCAGGTCG
CTCTGAATGTAGTAACTTCTTCTTGGGTTTATTTGTCTGAAGTTCAGGTTCAATGAAAAG
CTCAATTGACCCAATATTTGTGGCGCCAATTGCAGCCAGTGCCATAAACCCTTCCTGACA
TAGACCTTTAAGAATAACCCTCTC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004433A_C01 KMC004433A_c01
         (564 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_193403.1| decarboxylase like protein; protein id: At4g167...   103  1e-21
ref|NP_796272.1| RIKEN cDNA 9030221M09 gene [Mus musculus] gi|26...    89  3e-17
pir||S72438 phosphatidylserine decarboxylase (EC 4.1.1.65) precu...    89  4e-17
sp|P27465|DPSD_CRIGR PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME ...    89  4e-17
ref|NP_055153.1| phosphatidylserine decarboxylase [Homo sapiens]...    88  6e-17

>ref|NP_193403.1| decarboxylase like protein; protein id: At4g16700.1 [Arabidopsis
           thaliana] gi|7488143|pir||C71434 probable
           phosphatidylserine decarboxylase (EC 4.1.1.65)
           4COP9-4G3845 precursor - Arabidopsis thaliana
           gi|2245025|emb|CAB10445.1| decarboxylase like protein
           [Arabidopsis thaliana] gi|7268420|emb|CAB78712.1|
           decarboxylase like protein [Arabidopsis thaliana]
          Length = 434

 Score =  103 bits (258), Expect = 1e-21
 Identities = 50/70 (71%), Positives = 62/70 (88%)
 Frame = -1

Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
           ++V+L+G+ +EGFMALAA+GATNIGSIELFIEPEL+TNKPKKKL  +E PEERVYD +G+
Sbjct: 353 QQVVLEGIWKEGFMALAAVGATNIGSIELFIEPELRTNKPKKKLFPTEPPEERVYDPEGL 412

Query: 384 GRILKKGNEV 355
           G  L+KG EV
Sbjct: 413 GLRLEKGKEV 422

>ref|NP_796272.1| RIKEN cDNA 9030221M09 gene [Mus musculus]
           gi|26330095|dbj|BAC28786.1| unnamed protein product [Mus
           musculus]
          Length = 406

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 51/117 (43%), Positives = 70/117 (59%)
 Frame = -1

Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
           ERV+L G  + GF +L A+GATN+GSI +  + +L TNKPK     S      V   +  
Sbjct: 300 ERVVLTGDWKHGFFSLTAVGATNVGSIRIHFDRDLHTNKPKYS-KGSYNDLSFVTHANKE 358

Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
           G  ++KG  +G FN+GST+VL+F+AP           +DFNF +K G +IR GEALG
Sbjct: 359 GIPMRKGEPLGEFNLGSTIVLIFEAP-----------KDFNFRLKAGQKIRFGEALG 404

>pir||S72438 phosphatidylserine decarboxylase (EC 4.1.1.65) precursor,
           mitochondrial - Chinese hamster
          Length = 409

 Score = 89.0 bits (219), Expect = 4e-17
 Identities = 49/117 (41%), Positives = 70/117 (58%)
 Frame = -1

Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
           ERV+L G  + GF +L A+GATN+GSI ++ + +L TN P+     S      V   +  
Sbjct: 303 ERVVLSGDWKHGFFSLTAVGATNVGSIRIYFDQDLHTNSPRYS-KGSYNDLSFVTHANKE 361

Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
           G  ++KG  +G FN+GST+VL+F+AP           +DFNF +K G +IR GEALG
Sbjct: 362 GIPMRKGEHLGEFNLGSTIVLIFEAP-----------KDFNFRLKAGQKIRFGEALG 407

>sp|P27465|DPSD_CRIGR PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME gi|191185|gb|AAA37015.1|
           phosphatidylserine decarboxylase
          Length = 370

 Score = 89.0 bits (219), Expect = 4e-17
 Identities = 49/117 (41%), Positives = 70/117 (58%)
 Frame = -1

Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
           ERV+L G  + GF +L A+GATN+GSI ++ + +L TN P+     S      V   +  
Sbjct: 264 ERVVLSGDWKHGFFSLTAVGATNVGSIRIYFDQDLHTNSPRYS-KGSYNDLSFVTHANKE 322

Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
           G  ++KG  +G FN+GST+VL+F+AP           +DFNF +K G +IR GEALG
Sbjct: 323 GIPMRKGEHLGEFNLGSTIVLIFEAP-----------KDFNFRLKAGQKIRFGEALG 368

>ref|NP_055153.1| phosphatidylserine decarboxylase [Homo sapiens]
           gi|16306618|gb|AAH01482.1|AAH01482 phosphatidylserine
           decarboxylase [Homo sapiens]
          Length = 375

 Score = 88.2 bits (217), Expect = 6e-17
 Identities = 49/117 (41%), Positives = 70/117 (58%)
 Frame = -1

Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
           ERV+L G  + GF +L A+GATN+GSI ++ + +L TN P+     S      V   +  
Sbjct: 269 ERVVLTGDWKHGFFSLTAVGATNVGSIRIYFDRDLHTNSPRHS-KGSYNDFSFVTHTNRE 327

Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
           G  ++KG  +G FN+GST+VL+F+AP           +DFNF +K G +IR GEALG
Sbjct: 328 GVPMRKGEHLGEFNLGSTIVLIFEAP-----------KDFNFQLKTGQKIRFGEALG 373

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,253,175
Number of Sequences: 1393205
Number of extensions: 9126917
Number of successful extensions: 21850
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 21062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21785
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD060b07_f BP048749 1 559
2 MR038e08_f BP078952 15 543
3 MPD035d10_f AV772399 34 570




Lotus japonicus
Kazusa DNA Research Institute