KMC004433A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004433A_C01 KMC004433A_c01
attagagcttatctACTAGAAAATGCACTAAATAAACTTCAATTAGTGCTCTTCAGTTGG
TATCCAAAAGGTGCTAAACTTTGAATGGCAAATGGCACTCCCAAATCTACTATATTTACC
ACAAAACACATTAATTAGACAAAGAAAACACTGTCAATACATCGATTAATATCAATAGCT
AATCACAAAATTATCTTACGAACTATGCCACCTCCCAAGAGCCTCACCAACACGAATTCT
ATCCCCATGTTTGACACAGAAATTGAAGTCCTGTGATGAATCACCCTCGTGATTCAGTTT
CGAAATCGGAGCTTGGAAAACAAGTACAACGGTTGATCCCATGTTGAAAGCACCTACCTC
ATTCCCTTTCTTGAGTATTCTGCCAACACCATCACAATCATAAACTCGCTCTTCAGGTCG
CTCTGAATGTAGTAACTTCTTCTTGGGTTTATTTGTCTGAAGTTCAGGTTCAATGAAAAG
CTCAATTGACCCAATATTTGTGGCGCCAATTGCAGCCAGTGCCATAAACCCTTCCTGACA
TAGACCTTTAAGAATAACCCTCTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004433A_C01 KMC004433A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193403.1| decarboxylase like protein; protein id: At4g167... 103 1e-21
ref|NP_796272.1| RIKEN cDNA 9030221M09 gene [Mus musculus] gi|26... 89 3e-17
pir||S72438 phosphatidylserine decarboxylase (EC 4.1.1.65) precu... 89 4e-17
sp|P27465|DPSD_CRIGR PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME ... 89 4e-17
ref|NP_055153.1| phosphatidylserine decarboxylase [Homo sapiens]... 88 6e-17
>ref|NP_193403.1| decarboxylase like protein; protein id: At4g16700.1 [Arabidopsis
thaliana] gi|7488143|pir||C71434 probable
phosphatidylserine decarboxylase (EC 4.1.1.65)
4COP9-4G3845 precursor - Arabidopsis thaliana
gi|2245025|emb|CAB10445.1| decarboxylase like protein
[Arabidopsis thaliana] gi|7268420|emb|CAB78712.1|
decarboxylase like protein [Arabidopsis thaliana]
Length = 434
Score = 103 bits (258), Expect = 1e-21
Identities = 50/70 (71%), Positives = 62/70 (88%)
Frame = -1
Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
++V+L+G+ +EGFMALAA+GATNIGSIELFIEPEL+TNKPKKKL +E PEERVYD +G+
Sbjct: 353 QQVVLEGIWKEGFMALAAVGATNIGSIELFIEPELRTNKPKKKLFPTEPPEERVYDPEGL 412
Query: 384 GRILKKGNEV 355
G L+KG EV
Sbjct: 413 GLRLEKGKEV 422
>ref|NP_796272.1| RIKEN cDNA 9030221M09 gene [Mus musculus]
gi|26330095|dbj|BAC28786.1| unnamed protein product [Mus
musculus]
Length = 406
Score = 89.4 bits (220), Expect = 3e-17
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1
Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
ERV+L G + GF +L A+GATN+GSI + + +L TNKPK S V +
Sbjct: 300 ERVVLTGDWKHGFFSLTAVGATNVGSIRIHFDRDLHTNKPKYS-KGSYNDLSFVTHANKE 358
Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
G ++KG +G FN+GST+VL+F+AP +DFNF +K G +IR GEALG
Sbjct: 359 GIPMRKGEPLGEFNLGSTIVLIFEAP-----------KDFNFRLKAGQKIRFGEALG 404
>pir||S72438 phosphatidylserine decarboxylase (EC 4.1.1.65) precursor,
mitochondrial - Chinese hamster
Length = 409
Score = 89.0 bits (219), Expect = 4e-17
Identities = 49/117 (41%), Positives = 70/117 (58%)
Frame = -1
Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
ERV+L G + GF +L A+GATN+GSI ++ + +L TN P+ S V +
Sbjct: 303 ERVVLSGDWKHGFFSLTAVGATNVGSIRIYFDQDLHTNSPRYS-KGSYNDLSFVTHANKE 361
Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
G ++KG +G FN+GST+VL+F+AP +DFNF +K G +IR GEALG
Sbjct: 362 GIPMRKGEHLGEFNLGSTIVLIFEAP-----------KDFNFRLKAGQKIRFGEALG 407
>sp|P27465|DPSD_CRIGR PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME gi|191185|gb|AAA37015.1|
phosphatidylserine decarboxylase
Length = 370
Score = 89.0 bits (219), Expect = 4e-17
Identities = 49/117 (41%), Positives = 70/117 (58%)
Frame = -1
Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
ERV+L G + GF +L A+GATN+GSI ++ + +L TN P+ S V +
Sbjct: 264 ERVVLSGDWKHGFFSLTAVGATNVGSIRIYFDQDLHTNSPRYS-KGSYNDLSFVTHANKE 322
Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
G ++KG +G FN+GST+VL+F+AP +DFNF +K G +IR GEALG
Sbjct: 323 GIPMRKGEHLGEFNLGSTIVLIFEAP-----------KDFNFRLKAGQKIRFGEALG 368
>ref|NP_055153.1| phosphatidylserine decarboxylase [Homo sapiens]
gi|16306618|gb|AAH01482.1|AAH01482 phosphatidylserine
decarboxylase [Homo sapiens]
Length = 375
Score = 88.2 bits (217), Expect = 6e-17
Identities = 49/117 (41%), Positives = 70/117 (58%)
Frame = -1
Query: 564 ERVILKGLCQEGFMALAAIGATNIGSIELFIEPELQTNKPKKKLLHSERPEERVYDCDGV 385
ERV+L G + GF +L A+GATN+GSI ++ + +L TN P+ S V +
Sbjct: 269 ERVVLTGDWKHGFFSLTAVGATNVGSIRIYFDRDLHTNSPRHS-KGSYNDFSFVTHTNRE 327
Query: 384 GRILKKGNEVGAFNMGSTVVLVFQAPISKLNHEGDSSQDFNFCVKHGDRIRVGEALG 214
G ++KG +G FN+GST+VL+F+AP +DFNF +K G +IR GEALG
Sbjct: 328 GVPMRKGEHLGEFNLGSTIVLIFEAP-----------KDFNFQLKTGQKIRFGEALG 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,253,175
Number of Sequences: 1393205
Number of extensions: 9126917
Number of successful extensions: 21850
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 21062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21785
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPD060b07_f |
BP048749 |
1 |
559 |
2 |
MR038e08_f |
BP078952 |
15 |
543 |
3 |
MPD035d10_f |
AV772399 |
34 |
570 |
|
Lotus japonicus
Kazusa DNA Research Institute