Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004432A_C01 KMC004432A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09514.1| GMFP5 [Glycine max] 99 3e-20
ref|NP_195958.1| expressed protein; protein id: At5g03380.1, sup... 52 8e-06
ref|NP_187173.1| unknown protein; protein id: At3g05220.1 [Arabi... 51 1e-05
emb|CAB61745.1| farnesylated protein [Cicer arietinum] 47 2e-04
ref|NP_565855.1| expressed protein; protein id: At2g36950.1, sup... 46 3e-04
>gb|AAD09514.1| GMFP5 [Glycine max]
Length = 217
Score = 99.4 bits (246), Expect = 3e-20
Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Frame = -1
Query: 584 VNQMEYQYPLQTPPMYWYDGQHEQGASSSSSSYGGYGGYGGMEVHHEPMYNNHYMEPSGY 405
+N+MEY + + PP +WYDG H G +S + + GYG NNHY+EP GY
Sbjct: 133 INKMEYMHRM-APPSFWYDGGHFPGQTSYAMEV--HPGYGASA-------NNHYVEP-GY 181
Query: 404 HVMNQGYPMQPPPQPFYMQPH-PPPQMFSDENPNACSVM 291
+NQGYP+QPP P+YM PH PPPQMFSDENPNACS+M
Sbjct: 182 --VNQGYPLQPP-LPYYMHPHAPPPQMFSDENPNACSIM 217
>ref|NP_195958.1| expressed protein; protein id: At5g03380.1, supported by cDNA:
gi_16604512 [Arabidopsis thaliana]
gi|11357290|pir||T48360 farnesylated protein-like -
Arabidopsis thaliana gi|7378619|emb|CAB83295.1|
farnesylated protein-like [Arabidopsis thaliana]
gi|16604513|gb|AAL24262.1| At5g03380/C160EPL23M
[Arabidopsis thaliana] gi|21591780|gb|AAM64219.1|
cadmium induced protein CdI19 [Arabidopsis thaliana]
gi|21655291|gb|AAM65357.1| At5g03380/C160EPL23M
[Arabidopsis thaliana]
Length = 392
Score = 51.6 bits (122), Expect = 8e-06
Identities = 41/111 (36%), Positives = 49/111 (43%), Gaps = 18/111 (16%)
Frame = -1
Query: 569 YQYPLQTPPMYWYDG------QHEQGASSSSSSYGGYGGYGGMEVHHEPMYNNHYMEPS- 411
Y YP Q PMY+Y QH SS SY EP N Y++ S
Sbjct: 298 YGYPPQ--PMYYYPEGQVYGQQHYMMQGQSSQSYV-----------QEPYSNQGYVQESY 344
Query: 410 ---GYHVMNQGYPMQPPPQPF-----YMQPHP---PPQMFSDENPNACSVM 291
GY QGY + PP P+ Y P+ P++FSDENPN CSVM
Sbjct: 345 MNQGY---GQGYGQEAPPPPYMNQQGYADPYGHMRAPELFSDENPNGCSVM 392
>ref|NP_187173.1| unknown protein; protein id: At3g05220.1 [Arabidopsis thaliana]
gi|6729032|gb|AAF27028.1|AC009177_18 unknown protein
[Arabidopsis thaliana]
Length = 541
Score = 50.8 bits (120), Expect = 1e-05
Identities = 32/101 (31%), Positives = 46/101 (44%), Gaps = 2/101 (1%)
Frame = -1
Query: 587 EVNQMEYQYPLQTPPMYWYDGQHEQGASSSSSSYGGYGGYGGMEVHHEPMYNNHYMEPSG 408
++NQ +Y + Q +Q + ++GGYGG G +++H MY Y +
Sbjct: 460 QMNQQQYMQMMMNQ-------QQQQQQQQQAVAHGGYGGGHGGDMYHPMMYARPYPAVNY 512
Query: 407 YHVMNQGYPMQPPPQPFYMQPHPP--PQMFSDENPNACSVM 291
H PPP P PH MFSDENP +CS+M
Sbjct: 513 AH---------PPPMP---PPHSDSYTHMFSDENPGSCSIM 541
>emb|CAB61745.1| farnesylated protein [Cicer arietinum]
Length = 101
Score = 46.6 bits (109), Expect = 2e-04
Identities = 29/80 (36%), Positives = 34/80 (42%)
Frame = -1
Query: 530 DGQHEQGASSSSSSYGGYGGYGGMEVHHEPMYNNHYMEPSGYHVMNQGYPMQPPPQPFYM 351
+G+ ++ A G G G E M N Y G V P P Y
Sbjct: 29 EGEEKKEAVEGDGEKSGGDGGGAEETKVVEMKKNEYYYKYGTEVFAY-------PDPAYP 81
Query: 350 QPHPPPQMFSDENPNACSVM 291
PPQ+FSDENPNACSVM
Sbjct: 82 LQAYPPQIFSDENPNACSVM 101
>ref|NP_565855.1| expressed protein; protein id: At2g36950.1, supported by cDNA:
19570. [Arabidopsis thaliana] gi|20197942|gb|AAD31580.2|
putative farnesylated protein [Arabidopsis thaliana]
Length = 386
Score = 46.2 bits (108), Expect = 3e-04
Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = -1
Query: 599 AKVVEVNQMEYQ----YPLQTPPMYWYDGQHEQGASSSSSSYGGYGGYGGMEVHHEPMYN 432
A V VN+M+Y YP T PM+W +G H G S S M + P+
Sbjct: 302 APVAMVNKMDYYGYSAYP--TAPMHWQEG-HVYGQSYS------------MTGQNYPVGG 346
Query: 431 NHYMEPSGYHVMNQGYPMQPPPQPFYMQPHP-PPQMFSDENPNACSVM 291
Y SGY+ ++ Y Y QP+ P MFSDENPN CSVM
Sbjct: 347 QSY-PGSGYNYASESYVP-------YAQPNVNAPGMFSDENPNGCSVM 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,591,203
Number of Sequences: 1393205
Number of extensions: 13011828
Number of successful extensions: 57737
Number of sequences better than 10.0: 312
Number of HSP's better than 10.0 without gapping: 41034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54051
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
