Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004428A_C01 KMC004428A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98166.1| RAB5A [Lotus japonicus] 199 2e-50
emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichori... 190 1e-47
emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichori... 190 1e-47
emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichori... 190 1e-47
emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichori... 190 1e-47
>emb|CAA98166.1| RAB5A [Lotus japonicus]
Length = 200
Score = 199 bits (507), Expect = 2e-50
Identities = 99/101 (98%), Positives = 99/101 (98%)
Frame = -2
Query: 626 RAKKWVQELQKQGNPNMVMAFAGNXSDLEDKRKVTADEARVYAEENGLFFMETSAXTAAN 447
RAKKWVQELQKQGNPNMVMAFAGN SDLEDKRKVTADEARVYAEENGLFFMETSA TAAN
Sbjct: 100 RAKKWVQELQKQGNPNMVMAFAGNKSDLEDKRKVTADEARVYAEENGLFFMETSAKTAAN 159
Query: 446 VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS 324
VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS
Sbjct: 160 VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS 200
>emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 190 bits (482), Expect = 1e-47
Identities = 93/101 (92%), Positives = 97/101 (95%)
Frame = -2
Query: 626 RAKKWVQELQKQGNPNMVMAFAGNXSDLEDKRKVTADEARVYAEENGLFFMETSAXTAAN 447
RAKKWVQELQKQGNPNMVMA AGN +DLEDKRKVTA+EARVYAEENGLFFMETSA TAAN
Sbjct: 96 RAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAAN 155
Query: 446 VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS 324
VNDVF+EIAKRLPRAQP QNPAGMVLVDRPAEGARA+SCCS
Sbjct: 156 VNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARAASCCS 196
>emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 190 bits (482), Expect = 1e-47
Identities = 93/101 (92%), Positives = 97/101 (95%)
Frame = -2
Query: 626 RAKKWVQELQKQGNPNMVMAFAGNXSDLEDKRKVTADEARVYAEENGLFFMETSAXTAAN 447
RAKKWVQELQKQGNPNMVMA AGN +DLEDKRKVTA+EARVYAEENGLFFMETSA TAAN
Sbjct: 100 RAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAAN 159
Query: 446 VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS 324
VNDVF+EIAKRLPRAQP QNPAGMVLVDRPAEGARA+SCCS
Sbjct: 160 VNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARAASCCS 200
>emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 190 bits (482), Expect = 1e-47
Identities = 93/101 (92%), Positives = 97/101 (95%)
Frame = -2
Query: 626 RAKKWVQELQKQGNPNMVMAFAGNXSDLEDKRKVTADEARVYAEENGLFFMETSAXTAAN 447
RAKKWVQELQKQGNPNMVMA AGN +DLEDKRKVTA+EARVYAEENGLFFMETSA TAAN
Sbjct: 100 RAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAAN 159
Query: 446 VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS 324
VNDVF+EIAKRLPRAQP QNPAGMVLVDRPAEGARA+SCCS
Sbjct: 160 VNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARAASCCS 200
>emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 190 bits (482), Expect = 1e-47
Identities = 93/101 (92%), Positives = 97/101 (95%)
Frame = -2
Query: 626 RAKKWVQELQKQGNPNMVMAFAGNXSDLEDKRKVTADEARVYAEENGLFFMETSAXTAAN 447
RAKKWVQELQKQGNPNMVMA AGN +DLEDKRKVTA+EARVYAEENGLFFMETSA TAAN
Sbjct: 100 RAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAAN 159
Query: 446 VNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS 324
VNDVF+EIAKRLPRAQP QNPAGMVLVDRPAEGARA+SCCS
Sbjct: 160 VNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARAASCCS 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,336,782
Number of Sequences: 1393205
Number of extensions: 11202641
Number of successful extensions: 25714
Number of sequences better than 10.0: 1068
Number of HSP's better than 10.0 without gapping: 24967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25608
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
