Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004426A_C01 KMC004426A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173069.1| unknown protein; protein id: At1g16180.1 [Arabi... 205 4e-52
gb|AAO73245.1| putative membrane protein [Oryza sativa (japonica... 160 8e-39
ref|NP_187268.1| hypothetical protein; protein id: At3g06170.1 [... 147 7e-35
ref|NP_741562.1| TMS membrane protein/tumour differentially expr... 82 4e-15
ref|NP_671914.1| hypothetical protein; protein id: At2g33205.1 [... 82 6e-15
>ref|NP_173069.1| unknown protein; protein id: At1g16180.1 [Arabidopsis thaliana]
gi|25354033|pir||F86296 hypothetical protein T24D18.26 -
Arabidopsis thaliana
gi|6587821|gb|AAF18512.1|AC010924_25 Contains similarity
to gb|AF181686 membrane protein TMS1d from Drosophila
melanogaster. ESTs gb|R64994, gb|AI994832, gb|Z47674
come from this gene. [Arabidopsis thaliana]
Length = 412
Score = 205 bits (521), Expect = 4e-52
Identities = 100/120 (83%), Positives = 109/120 (90%), Gaps = 2/120 (1%)
Frame = -1
Query: 567 LSVVYSAVRAGSSATVLSPPSSPRAGKPLLPLDGNEEEKNEKA--KPVTYSYSFFHLIFS 394
LSVVYSAVRAGSS T+LSPP SPRA KPLLP+DG EEK EK KPV+YSY+FFH+IFS
Sbjct: 293 LSVVYSAVRAGSSTTLLSPPDSPRAEKPLLPIDGKAEEKEEKENKKPVSYSYAFFHIIFS 352
Query: 393 LASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATAILFLWSLVAPIMFPEREF 214
LASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVR+VT WATA LF+WSLVAPI+FP+REF
Sbjct: 353 LASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRVVTSWATAGLFIWSLVAPILFPDREF 412
>gb|AAO73245.1| putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 417
Score = 160 bits (406), Expect = 8e-39
Identities = 79/124 (63%), Positives = 99/124 (79%), Gaps = 6/124 (4%)
Frame = -1
Query: 567 LSVVYSAVRAGSSATVLSPPSSPRAG--KPLLPLD----GNEEEKNEKAKPVTYSYSFFH 406
LSVVYSAVRAGSS T LSPPSSPR+G PLL D G K A+PV+YSY+FFH
Sbjct: 293 LSVVYSAVRAGSSTTFLSPPSSPRSGIKNPLLGDDNVEAGKSNSKEIDARPVSYSYTFFH 352
Query: 405 LIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATAILFLWSLVAPIMFP 226
+IF+LASMYSAMLLTGW+++ +S +L+DVGW +VWVRI T WATA L++W+LVAP++FP
Sbjct: 353 VIFALASMYSAMLLTGWTSAASDSSELMDVGWTTVWVRICTEWATAALYIWTLVAPLLFP 412
Query: 225 EREF 214
+R+F
Sbjct: 413 DRDF 416
>ref|NP_187268.1| hypothetical protein; protein id: At3g06170.1 [Arabidopsis
thaliana] gi|6862921|gb|AAF30310.1|AC018907_10
hypothetical protein [Arabidopsis thaliana]
Length = 315
Score = 147 bits (372), Expect = 7e-35
Identities = 76/122 (62%), Positives = 97/122 (79%), Gaps = 4/122 (3%)
Frame = -1
Query: 567 LSVVYSAVRAGSSATVLSPPSSPRAG-KPLL---PLDGNEEEKNEKAKPVTYSYSFFHLI 400
LSV+YSA+RAGSS T LSPPSSPR+G K L P DG + + E A+PV+YSYSFFH+I
Sbjct: 195 LSVLYSALRAGSSTTFLSPPSSPRSGVKDALLGDPEDGKKSGEAE-ARPVSYSYSFFHII 253
Query: 399 FSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATAILFLWSLVAPIMFPER 220
F+LASMY+AMLL+GW+ S ES L+DVGW SVWV+I T W TA L++W+L+AP++ P+R
Sbjct: 254 FALASMYAAMLLSGWTDS-SESATLIDVGWTSVWVKICTGWVTAGLYIWTLIAPLILPDR 312
Query: 219 EF 214
EF
Sbjct: 313 EF 314
>ref|NP_741562.1| TMS membrane protein/tumour differentially expressed protein,
possibly N-myristoylated [Caenorhabditis elegans]
gi|16604202|gb|AAL27257.1|AC024832_2 Hypothetical
protein Y57E12AL.1b [Caenorhabditis elegans]
Length = 389
Score = 82.4 bits (202), Expect = 4e-15
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Frame = -1
Query: 561 VVYSAVRAGSSATVLSPPSSPRAGKPLLPLDGNEEEKNEKA------KPVTYSYSFFHLI 400
++Y+++R S+ ++ + L + E +N K + V YSYSFFH +
Sbjct: 269 LLYASIRNSSNTSLGKITGGGNTSDEAIQLTDDAESQNSKRVYDNEEEGVAYSYSFFHFM 328
Query: 399 FSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATAILFLWSLVAPIMFPER 220
F+LAS+Y M LT W + L + SVWV+IV+ W L+ W+LVAPI++P+R
Sbjct: 329 FALASLYVMMTLTSWYKPSNDLSHL-NSNMASVWVKIVSSWVCVALYCWTLVAPIIYPDR 387
Query: 219 EF 214
EF
Sbjct: 388 EF 389
>ref|NP_671914.1| hypothetical protein; protein id: At2g33205.1 [Arabidopsis
thaliana]
Length = 421
Score = 81.6 bits (200), Expect = 6e-15
Identities = 39/81 (48%), Positives = 49/81 (60%)
Frame = -1
Query: 462 EEEKNEKAKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVT 283
+E K E P YSY FFHL+FSL +MY AML W+ S +DVGW S WV+IV
Sbjct: 329 DEAKEEDDIP--YSYGFFHLVFSLGAMYFAMLFISWNLSHSTEKWSIDVGWTSTWVKIVN 386
Query: 282 CWATAILFLWSLVAPIMFPER 220
W A ++LW L+API+ R
Sbjct: 387 EWFAAAIYLWKLIAPIVRQHR 407
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,109,197
Number of Sequences: 1393205
Number of extensions: 11932889
Number of successful extensions: 39337
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 36868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39235
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
