Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004425A_C01 KMC004425A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_059207.1| ORF59 [Xestia c-nigrum granulovirus] gi|6175703... 33 2.0
ref|ZP_00067603.1| hypothetical protein [Microbulbifer degradans... 32 3.4
ref|XP_146397.1| similar to Putative nuclear protein family memb... 32 4.5
pir||T30813 plasminogen related growth factor receptor 2 - Fugu ... 32 4.5
ref|NP_609085.1| CG9211-PA [Drosophila melanogaster] gi|7297195|... 31 7.6
>ref|NP_059207.1| ORF59 [Xestia c-nigrum granulovirus]
gi|6175703|gb|AAF05173.1|AF162221_59 ORF59 [Xestia
c-nigrum granulovirus]
Length = 651
Score = 33.1 bits (74), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = -2
Query: 133 TMHRFYLLLKRVVLRNYVRMSDKLSYVFQILNHYYQCYNLVFD 5
T+ F+LL R+Y R K Y +LN YY +N++ D
Sbjct: 490 TIEDFHLLTSNYESRDYNRFYGKKQYQKTLLNRYYSMFNIIVD 532
>ref|ZP_00067603.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 525
Score = 32.3 bits (72), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +1
Query: 163 ALWEWELDTLCCRYLNLTRGTYASLFHVQSL 255
+LW W C +++ TRGT A+LF V L
Sbjct: 97 SLWAWAFYQFCVQFIGRTRGTIATLFLVNCL 127
>ref|XP_146397.1| similar to Putative nuclear protein family member, nematode specific
[Caenorhabditis elegans] [Mus musculus]
Length = 3135
Score = 32.0 bits (71), Expect = 4.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 226 MCPWLGLGNDNRECPAPTPTMHKKSPSCWLKTMHR 122
M PW C PTP MHKKSP + ++ R
Sbjct: 1276 MSPWPSTTCHGNVCQCPTPGMHKKSPCGYCSSLVR 1310
>pir||T30813 plasminogen related growth factor receptor 2 - Fugu rubripes
gi|3927911|emb|CAA09100.1| plasminogen related growth
factor receptor 2 [Takifugu rubripes]
Length = 1375
Score = 32.0 bits (71), Expect = 4.5
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 385 FQGCGGGSYIC--MHICNFHWETKSCADAVDHVNPNAS 278
F CG S +C H C+ WE SCA + +P +
Sbjct: 525 FMNCGWCSGVCSRQHQCDMQWEKDSCAPVITEFSPKVA 562
>ref|NP_609085.1| CG9211-PA [Drosophila melanogaster] gi|7297195|gb|AAF52461.1|
CG9211-PA [Drosophila melanogaster]
gi|21428800|gb|AAM50119.1| GH03927p [Drosophila
melanogaster]
Length = 886
Score = 31.2 bits (69), Expect = 7.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 344 LQLPLGDKILCRCS*SCKPKRFKWT 270
L PLGD+++ C S +P+RF+W+
Sbjct: 62 LVAPLGDEVVLECETSLQPERFEWS 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,176,833
Number of Sequences: 1393205
Number of extensions: 10275964
Number of successful extensions: 25043
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25030
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
